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gttagtgaaacttattcaagatcgaaatattttctgtacaacttagatgcgactatgagagatctatttaaactgcttacggcctaaagcttgttgcttttcttcaattttagATAATAACAAATACAAGGGTGGAATCTACATGGTCTTTGAGTACATGGATCATGACTTGACTGGACTTGCTGATCGTCCTGGACTGAGATTTACGGTTCC
species | Arabidopsis thaliana |
transcript | AT5G64960.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGATCAAGGAAAGCCAG ATAATAACAAATACAAGGGTGGAATCTACATGGTCTTTGAGTACATGGATCEST: gi|124951133|gb|EL026532.1|EL026532
genomic: ATGATCAAGGAAAGCCAGgttagtgaaa ... tcaattttagATAATAACAAATACAAGGGTGGAATCTACATGGTCTTTGAGTACATGGATC
EST: GTCGAGATAGGGATGATCAAGGAAAGCCAG ATAATAACAAATACAAGGGTGGAAATCTACATGGTCTTTGAGTACATGEST: gi|163996634|gb|ES052000.1|ES052000
genomic: GTCGAGATAGGGATGATCAAGGAAAGCCAGgttagtgaaa ... tcaattttagATAATAACAAATACAAGGGTGGAA-TCTACATGGTCTTTGAGTACATG
EST: GTCGAGATAGGGATGATCAAGGAAAGCCAG ATAATAACAAATACAAGGGTGGAATCTACATGGTCTTTGAGTACATGGATCEST: gi|86059279|gb|DR355036.1|DR355036
genomic: GTCGAGATAGGGATGATCAAGGAAAGCCAGgttagtgaaa ... tcaattttagATAATAACAAATACAAGGGTGGAATCTACATGGTCTTTGAGTACATGGATC
EST: GTCGAGATAGGGATGATCAAGGAAAGCCAG ATAATAACAAATACAAGGGTGGTATCTACATGGTCTTTGAGTACATGGATCEST: gi|47829487|gb|CK119171.1|CK119171
genomic: GTCGAGATAGGGATGATCAAGGAAAGCCAGgttagtgaaa ... tcaattttagATAATAACAAATACAAGGGTGGAATCTACATGGTCTTTGAGTACATGGATC
EST: GTCGAGATAGGGATGATCAAGGAAAGCCAG ATAATAACAAATACAAGGGTGGAATCTACATGGTCTTTGAGTACATGGATC
genomic: GTCGAGATAGGGATGATCAAGGAAAGCCAGgttagtgaaa ... tcaattttagATAATAACAAATACAAGGGTGGAATCTACATGGTCTTTGAGTACATGGATC
gagatctatttaaactgcttacggcctaaagcttgttgcttttcttcaattttagATAATAACAAATACAAGGGTGGAATCTACATGGTCTTTGAGTACATGGATCATGACTTGACTGGACTTGCTGATCGTCCTGGACTGAGATTTACGGTTCC
cttgttgcttttcttc CT-rich tract
ttttcttcaatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgaaacttattcaagatcgaaatattttctgtacaacttagatgcgactatgagagatctatttaaactgcttacggcctaaagcttgttgcttttcttcaattttagATAATAACAAATACAAGGGTGGAATCTACATGGTCTTTGAGTACATGGATCATGACTTGACTGGACTTGCTGATCGTCCTGGACTGAGATTTACGGTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT