Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttggccgttcattcaaaattttagaaagtattaagtgatatcagatacttggcatactcagtactgtattcttattatattttacatgtgtagATTGATGTTGAAAATCCGTGTGTGGTAATGAGTCAAGACAAAAGCAGGGAGTTCTTACATTCTGGAAATGACAAAGATAAATTCAAG

Basic information

species Arabidopsis thaliana
transcript AT5G61460.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G61460.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G025340_T02 (Zea mays), 3'ss of exon 4
gtgagttttggccgttcattcaaaattttagaa-agtattaagtgatatcagatacttggcatactcagtactgtattcttat-tatat-tttacatgtgtagATTGATGTTGAAAATCCGTGTGTGGTAATGAGTCAAGACAAAAGCAGGGAGTTCTTACATTCTGGAAATGACAAAGATAAATTCAAG
    |||||   | || || |    |  | ||  | |  |  || || | |  | |  |  |||    || ||| ||||| ||  || | | |   | |  ||||||| |||||||| || |||||  | |||||||||||||||||||| ||||| |||||||| ||||||||||| ||||| ||||||
aattgttttaatc-tttatcctttctgctggattacttatttgtaatgtgat-tgccagatatatgttgt-ctgcattctgatgcatctgtgtgacttttcagATTGAAGTTGAAAACCCTTGTGTAATTATGAGTCAAGACAAAAGCAGAGAGTTTTTACATTCAGGAAATGACAAGGATAAGTTCAAG

upper sequence: AT5G61460.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv16s0013g00490.t01 (Vitis vinifera), 3'ss of exon 4
gtgagttttggccgttcattcaaaattttagaaagta-ttaagtgatatcagatacttggcatactcagtactgtattcttat---tatattttacatgtgt-agATTGATGTTGAAAATCCGTGTGTGGTAATGAGTCAAGACAAAAGCAGGGAGTTCTTACATTCTGGAAATGACAAAGATAAATTCAAG
     |  ||   | |  |  ||| | |        | |||  | || |     ||||   | |  | |  | ||| | || |   | | | |||| | | | ||||||||||||||||||| |||||| |||||||||||||||||||||| || || || ||||| || |||||||||||||||||||||
-----taatgaaggattctataaattctccttccccaattagtttatttattcaactttaaacatcctgctcagtaatgttttagatgtgtcttacttttctcagATTGATGTTGAAAATCCATGTGTGATAATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCAGGGAATGACAAAGATAAATTCAAG

upper sequence: AT5G61460.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: EFJ36741 (Selaginella moellendorffii), 3'ss of exon 4
gtgagttttggccgttcattcaaaattttagaaagtattaagtgatatcagatacttggcatactcagtactgtattcttattatattttacatgtgtagATTGATGTTGAAAATCCGTGTGTGGTAATGAGTCAAGACAAAAGCAGGGAGTTCTTACATTCTGGAAATGACAAAGATAAATTCAAG
                                               | ||      |  ||| |   | ||||    ||| |   ||  |    | ||||| ||||| |||||||| |||||| | ||||| |||||||| ||| | |||||| | ||||| ||||||||||| || || || |||
----------------------------------------------gtgagtcttccgtaatatttt-tcctgt----ttactgacttggatgcttatagATAGATGTCGAAAATCCTTGTGTGATCATGAGCCAAGACAAGAGCCGCGAGTTCCTGCATTCCGGAAATGACAAGGAAAAGTTTAAG

upper sequence: AT5G61460.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: EFJ27923 (Selaginella moellendorffii), 3'ss of exon 4
gtgagttttggccgttcattcaaaattttagaaagtattaagtgatatcagatacttggcatactcagtactgtattcttattatattttacatg--tgtagATTGATGTTGAAAATCCGTGTGTGGTAATGAGTCAAGACAAAAGCAGGGAGTTCTTACATTCTGGAAATGACAAAGATAAATTCAAG
                                                         | | | |  | || | ||    | |  |   ||  |||  | ||||| ||||| |||||||| |||||| | ||||| |||||||| ||| | |||||| | ||||| ||||||||||| || || ||||||
-----------------------------------------------------gtgagtcttccgtaatattttacctgtttactgacttggatgcttatagATAGATGTCGAAAATCCTTGTGTGATCATGAGCCAAGACAAGAGCCGCGAGTTCCTGCATTCCGGAAATGACAAGGAAAAGTTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcagatacttggcatactcagtactgtattcttattatattttacatgtgtagATTGATGTTGAAAATCCGTGTGTGGTAATGAGTCAAGACAAAAGCAGGGAGTTCTTACATTCTGGAAATGACAAAGATAAATTCAAG
                       tactgtattcttatta  TA-rich tract