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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttgcagctaacatgtttgataaattcatcttgcaatttctaatcagatatcaatatctcatcttttatcttgttattgtagGTTGGCCAATATCAAGGTGCCTACAAG

Basic information

species Arabidopsis thaliana
transcript AT5G50850.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124712593|gb|EH803995.1|EH803995
EST:     TTGATGAGGAAATGTCTGCTGATCCTAAAGTATTTGTCATGGGTGAAGAG                         GTTGGCCAATATCAAGGTGCC
genomic: TTGATGAGGAAATGTCTGCTGATCCTAAAGTATTTGTCATGGGTGAAGAGgttagttgca ... gttattgtagGTTGGCCAATATCAAGGTGCC
EST: gi|164016936|gb|ES123772.1|ES123772
EST:     TGAGGAAATGTCTGCTGATCCTAAAGTATTTGTCATGGGTGAAGAG                         GTTGGCCAATATCAAGGTGCCTACAAG
genomic: TGAGGAAATGTCTGCTGATCCTAAAGTATTTGTCATGGGTGAAGAGgttagttgca ... gttattgtagGTTGGCCAATATCAAGGTGCCTACAAG
EST: gi|164137578|gb|EL978552.1|EL978552
EST:     TCATGGGTGAAGAG                         GTTGGCCAATATCAAGGTGCCTACAAG
genomic: TCATGGGTGAAGAGgttagttgca ... gttattgtagGTTGGCCAATATCAAGGTGCCTACAAG
EST: gi|116443796|gb|EG486388.1|EG486388
EST:     TTGATGAGGAAATGTCTGCTGATCCTAAAGTATTTGTCATGGGTGAAGAG                         GTTGGCCAATATCAAGGTGCCTACAAG
genomic: TTGATGAGGAAATGTCTGCTGATCCTAAAGTATTTGTCATGGGTGAAGAGgttagttgca ... gttattgtagGTTGGCCAATATCAAGGTGCCTACAAG
EST: gi|116376958|gb|EG419550.1|EG419550
EST:     TTGATGAGGAAATGTCTGCTGATCCTAAAGTATTTGTCATGGGTGAAGAG                         GTTGGCCAATATCAAGGTGCCTACAAG
genomic: TTGATGAGGAAATGTCTGCTGATCCTAAAGTATTTGTCATGGGTGAAGAGgttagttgca ... gttattgtagGTTGGCCAATATCAAGGTGCCTACAAG
EST: gi|125265385|gb|EL279470.1|EL279470
EST:     TGAGGAAATGTCTGCTGATCCTAAAGTATTTGTCATGGGTGAAGAG                         GTTGGCCAATATCAAGGTGCCTACAAG
genomic: TGAGGAAATGTCTGCTGATCCTAAAGTATTTGTCATGGGTGAAGAGgttagttgca ... gttattgtagGTTGGCCAATATCAAGGTGCCTACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttgcaatttctaatcagatatcaatatctcatcttttatcttgttattgtagGTTGGCCAATATCAAGGTGCCTACAAG
          ttctaat  putative branch site (score: 2)
                                  tcttttatcttgtt  putative PPT
                                    ttttatcttgttatt  TA-rich tract