1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaaacccaattccggagctccaaatctgatttcttactctagtgactaagaaaataacttggatcggatggttttgttttgtagATGCGTGGGTTGGCGAAGAAGAAAGAGAACCCACCAGATGGTTTCATGTGTCCCTCTGGTTGGAAGGTGTTGGTTGACTACTACGACAGTCTCAGTGCAG
species | Arabidopsis thaliana |
transcript | AT5G43780.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTTTGATCCTTCCAGGTCTCAAGACTTCCTCTTCATATCAGGAACCAAG ATGCGTGGGTTGGCGAAGAAGAAAGAGAACCCCCCAGATGGTTTCATGTGTEST: gi|116377755|gb|EG420347.1|EG420347
genomic: TCTTTGATCCTTCCAGGTCTCAAGACTTCCTCTTCATATCAGGAACCAAGgtaaaaccca ... tgttttgtagATGCGTGGGTTGGCGAAGAAGAAAGAGAACCCACCAGATGGTTTCATGTGT
EST: TCTTTGATCCTTCCAGGTCTCAAGACTTCCTCTTCATATCAGGAACCAAG ATGCGTGGGTTGGEST: gi|116454026|gb|EG496618.1|EG496618
genomic: TCTTTGATCCTTCCAGGTCTCAAGACTTCCTCTTCATATCAGGAACCAAGgtaaaaccca ... tgttttgtagATGCGTGGGTTGG
EST: TCTTTGATCCTTCCAGGTCTCAAGACTTCCTCTTCATATCAGGAACCAAG ATGCGTGGGTTGGCGAAGAAGAAAGAGAACCCACCAGATGGTTTCATGTGT
genomic: TCTTTGATCCTTCCAGGTCTCAAGACTTCCTCTTCATATCAGGAACCAAGgtaaaaccca ... tgttttgtagATGCGTGGGTTGGCGAAGAAGAAAGAGAACCCACCAGATGGTTTCATGTGT
tttcttactctagtgactaagaaaataacttggatcggatggttttgttttgtagATGCGTGGGTTGGCGAAGAAGAAAGAGAACCCACCAGATGGTTTCATGTGTCCCTCTGGTTGGAAGGTGTTGGTTGACTACTACGACAGTCTCAGTGCAG
aaataac putative branch site (score: 2)
ttttgtttt putative PPT
taagaaaataactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaacccaattccggagctccaaatctgatttcttactctagtgactaagaaaataacttggatcggatggttttgttttgtagATGCGTGGGTTGGCGAAGAAGAAAGAGAACCCACCAGATGGTTTCATGTGTCCCTCTGGTTGGAAGGTGTTGGTTGACTACTACGACAGTCTCAGTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG