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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatgtacaactgatctgtccttaattaagttcttggcatcttgtggttgcagtcacactgatacattttaactaggaaagaccttgaaagctgacagaaaatgtttctttcttttgttattcattctcatcagGCCCTTGGTATCCCAACTGGTCCCCATGGAGCTTTCCGCGATTATCAAGTTGATGCTATAACTTTGAAAGTTTCACCTAGATTTCCTCCTGACAGTAAGA

Basic information

species Arabidopsis thaliana
transcript AT5G19130.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G19130.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G054470_T01 (Zea mays), 3'ss of exon 5
gtaaaatgtacaactgatctgtccttaattaagttcttggcatcttgtggttgcagtcacactgatacattttaactaggaaagaccttgaaagctgac-agaaaatgtttctttcttttgttattcattctcatcagGCCCTTGGTATCCCAACTGGTCCCCATGGAGCTTTCCGCGATTATCAAGTTGATGCTATAACTTTGAAAGTTTCACCTAGATTTCCTCCTGACAGTAAGA
                                              || || | | | | |||  | ||||  | ||       || ||      | |  |    |   | | |  | |||  |||  ||     ||||| |||||  | || || ||  ||||||| |||||||| |||||||||||||||||  |  ||||  || ||||||| | ||||| |    | | | |||
----------------------------------------------gtagtagaaatta-acttttccattacaccttaatgtcacgtttcttttttatgactccacagtccctcttattgggatttgtttgatacagGCTCTTGGAGTGCCCACAGGGTCCCATGGTGCTTTCCGTGATTATCAAGTTGATGCGGTTTCTTTAGAATTTTCACCAACATTTCATGTCAAAAATGAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaccttgaaagctgacagaaaatgtttctttcttttgttattcattctcatcagGCCCTTGGTATCCCAACTGGTCCCCATGGAGCTTTCCGCGATTATCAAGTTGATGCTATAACTTTGAAAGTTTCACCTAGATTTCCTCCTGACAGTAAGA
          agctgac  putative branch site (score: 3)
                         tttctttcttttgtta  putative PPT
                             tttcttttgttatt  TA-rich tract