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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtacacacataaagagacaaaattgagtgacaactcgagatcctctttttctttattcatatataatatatttctttttgtgtttacgtacagttttacaagtattcgcttattattgttcttttggtttggttgatgtgattagGCAAAGATACTAAAGACGTACGCGAAGCATCAGCTTTCTCTAACAACACTAATTTGCTTCATCGGAACACTACAAGCAGTTGCTGTGACGTTTGTGATGG

Basic information

species Arabidopsis thaliana
transcript AT5G07050.1
intron # 4
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagttttacaagtattcgcttattattgttcttttggtttggttgatgtgattagGCAAAGATACTAAAGACGTACGCGAAGCATCAGCTTTCTCTAACAACACTAATTTGCTTCATCGGAACACTACAAGCAGTTGCTGTGACGTTTGTGATGG
                                        ggttgat  putative branch site (score: 5)
                   ttattattgttctttt  TA-rich tract