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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttactattctttagttccctgctaatgcatataattgtcttctaatattagattgtgtttttcagAAATATAGGACAGCTAGATATCGGCCAGAACCATCAGAAACTG

Basic information

species Arabidopsis thaliana
transcript AT4G28610.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164079185|gb|ES178022.1|ES178022
EST:     TTATGAAAGTTGAAGGCTTGACTATATATCATGTTAAAAGCCATTTACAG                         AAATATAGGACAGCTAGATATCGGCCAGAACCATCAGAAAC
genomic: TTATGAAAGTTGAAGGCTTGACTATATATCATGTTAAAAGCCATTTACAGgttcttacta ... tgtttttcagAAATATAGGACAGCTAGATATCGGCCAGAACCATCAGAAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagttccctgctaatgcatataattgtcttctaatattagattgtgtttttcagAAATATAGGACAGCTAGATATCGGCCAGAACCATCAGAAACTG
                             ttctaat  putative branch site (score: 2)
                                             tgtttttc  putative PPT
                  atataattgtcttcta  TA-rich tract