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...cctaagataggtccaatttgttggaatggaaaacacttgccataatgcagcttggaaatcaaagagtgtaatattcgttgttgtgttgactaatttccagGCAGCAACAATGGTAATAAGAGATTCTGTTGAACCTCTGCTTGAAGATTACAGACCACCAGGAATTACTTCCCTGAAGTTCAGCAAATTGACGTTGGGTA
species | Arabidopsis thaliana |
transcript | AT3G61050.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGAGCAAGATGTGGCCATATATTGCAGAG GCAGCAACAATGGTAATAAGAGATTCTGTTGAACCTCTGCTTGAAGATTACEST: gi|116380658|gb|EG423250.1|EG423250
genomic: CTGAGCAAGATGTGGCCATATATTGCAGAGgtgagattct ... taatttccagGCAGCAACAATGGTAATAAGAGATTCTGTTGAACCTCTGCTTGAAGATTAC
EST: TCAAATGGCTGAATAAACTACTGAGCAAGATGTGGCCATATATTGCAGAG GCAGCAACAATGGTAATAAGAGATTCTGTTGAACCTCTGCTTGAAGATTACEST: gi|124857098|gb|EH941535.1|EH941535
genomic: TCAAATGGCTGAATAAACTACTGAGCAAGATGTGGCCATATATTGCAGAGgtgagattct ... taatttccagGCAGCAACAATGGTAATAAGAGATTCTGTTGAACCTCTGCTTGAAGATTAC
EST: TCAAATGGCTGAATAAACTACTGAGCAAGATGTGGCCATATATTGCAGAG GCAGCAACAATGGTAATAAGAGATTCTGTTGAACCEST: gi|19874467|gb|AU235298.1|AU235298
genomic: TCAAATGGCTGAATAAACTACTGAGCAAGATGTGGCCATATATTGCAGAGgtgagattct ... taatttccagGCAGCAACAATGGTAATAAGAGATTCTGTTGAACC
EST: TCAAATGGCTGAATAAACTACTGAGCAAGATGTGGCCATATATTGCAGAG GCAGCAACAATGGTAATAAGAGATTCTGTTGAACCTCTGCTTGAAGATTAC
genomic: TCAAATGGCTGAATAAACTACTGAGCAAGATGTGGCCATATATTGCAGAGgtgagattct ... taatttccagGCAGCAACAATGGTAATAAGAGATTCTGTTGAACCTCTGCTTGAAGATTAC
tgcagcttggaaatcaaagagtgtaatattcgttgttgtgttgactaatttccagGCAGCAACAATGGTAATAAGAGATTCTGTTGAACCTCTGCTTGAAGATTACAGACCACCAGGAATTACTTCCCTGAAGTTCAGCAAATTGACGTTGGGTA
gactaat putative branch site (score: 2)
tttcc CT-rich tract
tgtaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctaagataggtccaatttgttggaatggaaaacacttgccataatgcagcttggaaatcaaagagtgtaatattcgttgttgtgttgactaatttccagGCAGCAACAATGGTAATAAGAGATTCTGTTGAACCTCTGCTTGAAGATTACAGACCACCAGGAATTACTTCCCTGAAGTTCAGCAAATTGACGTTGGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG