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gtatagtgtgatttttattattttccaaaggatgtttataaaatgaaaactggtagcaaagttcatcctttaataatttgtctaagataaactgaccactgctgccccttgtttatgactttaatggaatatgattgttcattgatgtaatgttggctgttataacagAACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATAGAG
species | Arabidopsis thaliana |
transcript | AT3G54660.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATTTTCGCATGTTATGTTTGCAACTGGTCGCAAGCCCAACACAAAG AACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGEST: gi|86059409|gb|DR355166.1|DR355166
genomic: GATTTTCGCATGTTATGTTTGCAACTGGTCGCAAGCCCAACACAAAGgtatagtgtg ... gttataacagAACTTAGGGTTGGAGAATGTTGGCGTTAAAATGG
EST: AGGGATTTTCGCATGTTATGTTTGCAACTGGTCGCAAGCCCAACACAAAG AACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATAEST: gi|125139238|gb|EL178116.1|EL178116
genomic: AGGGATTTTCGCATGTTATGTTTGCAACTGGTCGCAAGCCCAACACAAAGgtatagtgtg ... gttataacagAACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATA
EST: TTTGCAACTGGTCGCAAGCCCAACACAAAG AACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATAEST: gi|86059408|gb|DR355165.1|DR355165
genomic: TTTGCAACTGGTCGCAAGCCCAACACAAAGgtatagtgtg ... gttataacagAACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATA
EST: AGGGATTTTCGCATGTTATGTTTGCAACTGGTCGCAAGCCCAACACAAAG AACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATAEST: gi|124756096|gb|EH846226.1|EH846226
genomic: AGGGATTTTCGCATGTTATGTTTGCAACTGGTCGCAAGCCCAACACAAAGgtatagtgtg ... gttataacagAACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATA
EST: CTGGTCGCAAGCCCAACACAAAG AACTTAGGGTTGGAGAEST: gi|47828527|gb|CK118211.1|CK118211
genomic: CTGGTCGCAAGCCCAACACAAAGgtatagtgtg ... gttataacagAACTTAGGGTTGGAGA
EST: AGGGATTTTCGCATGTTATGTTTGCAACTGGTCGCAAGCCCAACACAAAG AACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATA
genomic: AGGGATTTTCGCATGTTATGTTTGCAACTGGTCGCAAGCCCAACACAAAGgtatagtgtg ... gttataacagAACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATA
tatgactttaatggaatatgattgttcattgatgtaatgttggctgttataacagAACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATAGAG
cattgat putative branch site (score: 4)
aatatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagtgtgatttttattattttccaaaggatgtttataaaatgaaaactggtagcaaagttcatcctttaataatttgtctaagataaactgaccactgctgccccttgtttatgactttaatggaatatgattgttcattgatgtaatgttggctgttataacagAACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA