1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtagatcatttggattgatgtctcatattaggtttagtcgtattcatgatgatgggtaaggtaaagtttggatttttattttttgtgattgatattggtacagGTTAAGGTTGACATGGGGACACCGATTCTTAAAGCACAAGATGTGCCCACGAAATTGTCAGGGAACAAAGGTGAAGCTGTTGTTGAGGCAGAGCTAGTTG
species | Arabidopsis thaliana |
transcript | AT3G53580.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TACATACCGGTGCCGGGTTGATTGTTCCNGAAATTCAAGATGACGGACAG GTTAAGGTTGACATGGGGACACCGATTCTTAAAGCACAAGATGTGCCCACGEST: gi|124751043|gb|EH841173.1|EH841173
genomic: TACATACCGGTGCCGGGTTGATTGTTCCAGAAATTCAAGATGACGGACAGgtagatcatt ... attggtacagGTTAAGGTTGACATGGGGACACCGATTCTTAAAGCACAAGATGTGCCCACG
EST: TCCAGAAATTCAAGATGACGGACAG GTTAAGGTTGACATGGGGACACCGATTCTTAAAGCACAAGATGTGCCCACGEST: gi|86033409|gb|DR329162.1|DR329162
genomic: TCCAGAAATTCAAGATGACGGACAGgtagatcatt ... attggtacagGTTAAGGTTGACATGGGGACACCGATTCTTAAAGCACAAGATGTGCCCACG
EST: TACATACCGGTGCCGGGTTGATTGTTCCAGAAATTCAAGATGACGGACAG GTTAAGGTTGACATGGGGACACCGATTCTTAAAGCACAAGATGTGCCCACGEST: gi|125271213|gb|EL285298.1|EL285298
genomic: TACATACCGGTGCCGGGTTGATTGTTCCAGAAATTCAAGATGACGGACAGgtagatcatt ... attggtacagGTTAAGGTTGACATGGGGACACCGATTCTTAAAGCACAAGATGTGCCCACG
EST: TACATACCGGTGCCGGGTTGATTGTTCCAGAAATTCAAGATGACGGACAG GTTAAGGTTGACATGGGGACACCGATTCTTAAAGCACAAGATGTGCCCACGEST: gi|125019806|gb|EL092075.1|EL092075
genomic: TACATACCGGTGCCGGGTTGATTGTTCCAGAAATTCAAGATGACGGACAGgtagatcatt ... attggtacagGTTAAGGTTGACATGGGGACACCGATTCTTAAAGCACAAGATGTGCCCACG
EST: ATACCGGTGCCGGGTTGATTGTTCCAGAAATTCAAGATGACGGACAG GTTAAGGTTGACATGGGGACACCGATTCTTAAAGCACAAGATGTGCCCACGEST: gi|125194166|gb|EL209120.1|EL209120
genomic: ATACCGGTGCCGGGTTGATTGTTCCAGAAATTCAAGATGACGGACAGgtagatcatt ... attggtacagGTTAAGGTTGACATGGGGACACCGATTCTTAAAGCACAAGATGTGCCCACG
EST: CCGGTGCCGGGTTGATTGTTCCAGAAATTCAAGATGACGGACAG GTTAAGGTTGACATGGGGACACCGATTCTTAAAGCACAAGATGTGCCCACG
genomic: CCGGTGCCGGGTTGATTGTTCCAGAAATTCAAGATGACGGACAGgtagatcatt ... attggtacagGTTAAGGTTGACATGGGGACACCGATTCTTAAAGCACAAGATGTGCCCACG
atgatgggtaaggtaaagtttggatttttattttttgtgattgatattggtacagGTTAAGGTTGACATGGGGACACCGATTCTTAAAGCACAAGATGTGCCCACGAAATTGTCAGGGAACAAAGGTGAAGCTGTTGTTGAGGCAGAGCTAGTTG
gattgat putative branch site (score: 4)
atttttattttttgtg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagatcatttggattgatgtctcatattaggtttagtcgtattcatgatgatgggtaaggtaaagtttggatttttattttttgtgattgatattggtacagGTTAAGGTTGACATGGGGACACCGATTCTTAAAGCACAAGATGTGCCCACGAAATTGTCAGGGAACAAAGGTGAAGCTGTTGTTGAGGCAGAGCTAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT