1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttagttttctccctctgtcaaatcatccaactaggattaaaatagttatatttgacttaataaatgtattgtgatgatgattcaacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAGGTGGAATTTGCTTCTAAGCAACAGAAGGTCAAGGCTAATTTCCCCAAA
species | Arabidopsis thaliana |
transcript | AT3G53020.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAEST: gi|164035136|gb|EL969111.1|EL969111
genomic: TTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: GTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAEST: gi|164222814|gb|ES039643.1|ES039643
genomic: GTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: GGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAAGACCAAAGATGAAAAGAAGGCTAAGAEST: gi|164132166|gb|ES040863.1|ES040863
genomic: GGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATC-AAAAAGACCAAAGATGAAAAGAAGGCTAAGA
EST: TGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAAGACCAAAGATGAAAAGAAGGCTAAGAEST: gi|116480001|gb|EG522593.1|EG522593
genomic: TGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAA-GACCAAAGATGAAAAGAAGGCTAAGA
EST: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTTTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAEST: gi|86045768|gb|DR341523.1|DR341523
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: AGAGCTGAGAACCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAEST: gi|116472836|gb|EG515428.1|EG515428
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTTTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAEST: gi|116480002|gb|EG522594.1|EG522594
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAEST: gi|124897550|gb|EH973764.1|EH973764
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: CAGCCAGGGAAGCTGCTCTGCG TEST: gi|124897550|gb|EH973764.1|EH973764
genomic: CAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacag-
EST: CAGCCAGGGAAGCTGCTCTGCG TEST: gi|164196210|gb|EL979579.1|EL979579
genomic: CAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacag-
EST: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGEST: gi|116410667|gb|EG453259.1|EG453259
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGG
EST: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAEST: gi|164169859|gb|ES083914.1|ES083914
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: AGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAEST: gi|116452319|gb|EG494911.1|EG494911
genomic: AGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAEST: gi|164160729|gb|ES025920.1|ES025920
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: TTCGTGATGCAGCCTGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAEST: gi|86078101|gb|DR373858.1|DR373858
genomic: TTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAEST: gi|164008791|gb|ES162368.1|ES162368
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGEST: gi|164021080|gb|ES123816.1|ES123816
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGG
EST: GAGCTGAGAAGCCTGAAGTTCGTGATGCCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGEST: gi|125020474|gb|EL092743.1|EL092743
genomic: GAGCTGAGAAGCCTGAAGTTCGTGATG-CAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATG
EST: AGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAEST: gi|86082625|gb|DR378384.1|DR378384
genomic: AGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAEST: gi|164168482|gb|ES127117.1|ES127117
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: GAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAEST: gi|125158654|gb|EL187144.1|EL187144
genomic: GAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAA-GAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGA
EST: GCAGCCAGGGAAGCTGCTCTGCG TEST: gi|125158654|gb|EL187144.1|EL187144
genomic: GCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacag-
EST: GCAGCCAGGGAAGCTGCTCTGCG TEST: gi|164010284|gb|ES138360.1|ES138360
genomic: GCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacag-
EST: TCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAEST: gi|164031177|gb|ES079664.1|ES079664
genomic: TCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAA-GACCAAAGATGEST: gi|164016151|gb|ES076402.1|ES076402
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATG
EST: GATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAAGACCAAAGATGAAAAGAAGGCTAAGAEST: gi|116483020|gb|EG525612.1|EG525612
genomic: GATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATC-AAAAAGACCAAAGATGAAAAGAAGGCTAAGA
EST: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAEST: gi|163993460|gb|ES080128.1|ES080128
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAEST: gi|164114703|gb|ES082366.1|ES082366
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGA
EST: TGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAEST: gi|163991069|gb|ES148691.1|ES148691
genomic: TGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGEST: gi|116472837|gb|EG515429.1|EG515429
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGG
EST: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAEST: gi|125201795|gb|EL216749.1|EL216749
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: AAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAEST: gi|164072079|gb|ES064661.1|ES064661
genomic: AAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: CCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAEST: gi|124727773|gb|EH819175.1|EH819175
genomic: CCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: TTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAEST: gi|164112667|gb|EL979360.1|EL979360
genomic: TTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAEST: gi|124978670|gb|EL051816.1|EL051816
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAA
EST: GATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGEST: gi|116483018|gb|EG525610.1|EG525610
genomic: GATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGG
EST: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAEST: gi|125317361|gb|EL331446.1|EL331446
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: CTGAAGTTCGTGATGCAGCCAGGGTAAGTCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAEST: gi|124752983|gb|EH843113.1|EH843113
genomic: CTGAAGTTCGTGATGCAGCCAGGG-AAG-CTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: AGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAEST: gi|125091817|gb|EL149640.1|EL149640
genomic: AGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAA
EST: AAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAEST: gi|125124938|gb|EL170625.1|EL170625
genomic: AAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
EST: CCTGAGGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAEST: gi|86081830|gb|DR377589.1|DR377589
genomic: CCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGG-AAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGA
EST: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCG TGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
genomic: AGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGgttagttttc ... caacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAA
taaaatagttatatttgacttaataaatgtattgtgatgatgattcaacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAGGTGGAATTTGCTTCTAAGCAACAGAAGGTCAAGGCTAATTTCCCCAAA
acttaat putative branch site (score: 4)
tagttatatttgactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttttctccctctgtcaaatcatccaactaggattaaaatagttatatttgacttaataaatgtattgtgatgatgattcaacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAGGTGGAATTTGCTTCTAAGCAACAGAAGGTCAAGGCTAATTTCCCCAAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA