1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtcctacttaagcaaatctagattttaacagtcttgagaatagtgtttagcctgtacttaactttatattttcctgcagTGTCACAGCTCAAGACCTCGTCGACATCATCAAATCACAGCTCCAAAA
species | Arabidopsis thaliana |
transcript | AT3G44890.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAAGGCGGTAAAGGCAAACTGATATTTGGATC TGTCACAGCTCAAGACCTCGTCGACATCATCAAATCACAGCTCCAAAAEST: gi|124816738|gb|EH901604.1|EH901604
genomic: AAAGGCGGTAAAGGCAAACTGATATTTGGATCgtaagtccta ... tttcctgcagTGTCACAGCTCAAGACCTCGTCGACATCATCAAATCACAGCTCCAAAA
EST: GCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATC TGTCACAGCTCAAGACCTCGTCGACATCATCAAAEST: gi|124755045|gb|EH845175.1|EH845175
genomic: GCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATCgtaagtccta ... tttcctgcagTGTCACAGCTCAAGACCTCGTCGACATCATCAAA
EST: GCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATC TGTCACAGCTCAAGAEST: gi|125122904|gb|EL169353.1|EL169353
genomic: GCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATCgtaagtccta ... tttcctgcagTGTCACAGCTCAAGA
EST: GCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATC CGTCACAGCTCAAGACCTCEST: gi|124866086|gb|EH950523.1|EH950523
genomic: GCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATCgtaagtccta ... tttcctgcagTGTCACAGCTCAAGACCTC
EST: AAAGGCGGTAAAGGCAAACTGATATTTGGATC TEST: gi|124866086|gb|EH950523.1|EH950523
genomic: AAAGGCGGTAAAGGCAAACTGATATTTGGATCgtaagtccta ... tttcctgcag-
EST: AAAGGCGGTAAAGGCAAACTGATATTTGGATC TEST: gi|163997582|gb|EL996183.1|EL996183
genomic: AAAGGCGGTAAAGGCAAACTGATATTTGGATCgtaagtccta ... tttcctgcag-
EST: GCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATC TGTCACAGCTCAAGACCTCGTEST: gi|124928859|gb|EL006462.1|EL006462
genomic: GCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATCgtaagtccta ... tttcctgcagTGTCACAGCTCAAGACCTCGT
EST: GCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATC TGTCACAGCTCAAGACCTC
genomic: GCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATCgtaagtccta ... tttcctgcagTGTCACAGCTCAAGACCTC
ttaacagtcttgagaatagtgtttagcctgtacttaactttatattttcctgcagTGTCACAGCTCAAGACCTCGTCGACATCATCAAATCACAGCTCCAAAA
ctttatattttcct CT-rich tract
tacttaactttatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcctacttaagcaaatctagattttaacagtcttgagaatagtgtttagcctgtacttaactttatattttcctgcagTGTCACAGCTCAAGACCTCGTCGACATCATCAAATCACAGCTCCAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC