1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tttcttagtttgcaactgattacaacaggtggttttaagttttagattcatttggttttgtcataggcgcgtataaaccttatgttcctttgtttgaaagGGTGGACTACAAGCACTTATAACGTCTATTAAGAAACAAGATCCTGATAAAGTGTCCCTTGGGCTGGCAGCATCACTAGATACTGTTGCGGATCTGGAGT
species | Arabidopsis thaliana |
transcript | AT3G15520.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTATACAACTCTGATTGATGGAAAG GGTGGACTACAAGCACTTATAACGTCTATTAAGAAACAAGATCCTGATAAAEST: gi|125040804|gb|EL113073.1|EL113073
genomic: GTATACAACTCTGATTGATGGAAAGgtacgtggga ... tgtttgaaagGGTGGACTACAAGCACTTATAACGTCTATTAAGAAACAAGATCCTGATAAA
EST: ACTTAAAAGACAAGGGCTCAGAACTGTATACAACTCTGATTGATGGAAAG GGTGGACTGCAAGCACTTATAACGTCTATTAAGAAACAAGATCC
genomic: ACTTAAAAGACAAGGGCTCAGAACTGTATACAACTCTGATTGATGGAAAGgtacgtggga ... tgtttgaaagGGTGGACTACAAGCACTTATAACGTCTATTAAGAAACAAGATCC
attcatttggttttgtcataggcgcgtataaaccttatgttcctttgtttgaaagGGTGGACTACAAGCACTTATAACGTCTATTAAGAAACAAGATCCTGATAAAGTGTCCCTTGGGCTGGCAGCATCACTAGATACTGTTGCGGATCTGGAGT
ccttatgttccttt CT-rich tract
tataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcttagtttgcaactgattacaacaggtggttttaagttttagattcatttggttttgtcataggcgcgtataaaccttatgttcctttgtttgaaagGGTGGACTACAAGCACTTATAACGTCTATTAAGAAACAAGATCCTGATAAAGTGTCCCTTGGGCTGGCAGCATCACTAGATACTGTTGCGGATCTGGAGT
- - - - - - - - - - -acaacag
- - - - - - - - - - - - - - - ggtttta
- - - - - - - - - - - - - - - - - - - gttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - -ggttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaacc