Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctcattctcacttttgaattgtggacgatccttttgtagtcgcggttagtttggtttatatcttcaacttttaagttttgtttttttgcttacagATTTTTGGAATTCCCGAGGGACATAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATATATGGTTCCGTAATTACC

Basic information

species Arabidopsis thaliana
transcript AT3G15460.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G15460.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: LOC_Os02g37870.1 (Oryza sativa), 3'ss of exon 4
gtctcattctcacttttgaattgtggacgatccttttgtagtc--gcggtt---agtttggtttatatcttcaactttt--aagtt--ttgtttttttgcttacagATTTTTGGAATTCCCGAGGGACATAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATATATGGTTCCGTAATTACC
     | || |    |  | || |  | | | ||||| ||||   || |||   |       ||        ||   |   ||  |   | || |||    | ||||| ||||  | |||  | |  ||| | ||| | || ||||  ||||||||||||||||| ||||| || |||||||||||| | |||||  | ||||| |
-----aatc-cgtgatgaagttatacatgcttcttttctagtaaagcagttgagaaacaaacttgccctaaaaaacataagaaactaactattatttgctctgcagATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCATGTGTTTGTCTTCTCTATCGTTGATGACCATGTTTGGTTTAGAAATTATC

upper sequence: AT3G15460.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G160458_T01 (Zea mays), 3'ss of exon 4
---gtctcattctcacttttgaattgtggacgatccttttgtagtcgcggttagtttggtttatatcttcaacttttaagttttgtttttttgcttacagATTTTTGGAATTCCCGAGGGACATAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATATATGGTTCCGTAATTACC
    | ||||  | |  |      || |    ||   ||  ||         || ||    || | | | |   |  ||   ||   | |     | ||||| ||||  | |||  | |  ||  | ||  | ||||||| |||||||||||||||||| ||||||||||| |||| |||| | ||||| || || ||||
caactttcatatttatgtgctttatgggacaaataagttcttacaaagtagaagattctcataaaacatgattgtgaaatcattacctgtacttgtccagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATGTGTTTGTCTTCTCCATTGTGGATGGCCATGTTTGGTTTCGAAACTACC

upper sequence: AT3G15460.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G168176_T01 (Zea mays), 3'ss of exon 4
----gtctcattctcacttttgaattgtggacgatccttttgtagtcgcggttagtttggtttatatcttcaacttttaagttttgtttttttgcttacagATTTTTGGAATTCCCGAGGGACATAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATATATGGTTCCGTAATTACC
     | ||||  |||  |    || |   |  ||   ||  ||    |    || ||  |  | | | | | | |  ||   ||   | |     | ||||| ||||  | |||  | |  ||  | ||  | ||||||| |||||||||||| ||||| ||||||||||| |||| |||| | ||||| || || ||||
tgaactttcatgttcatctgcttatgggaca-aataagttcttacgaactagaagattcttgcaaaacatgatcgtgaaaccattacctgtacttgtgcagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATGTATTTGTCTTCTCCATTGTGGATGGCCATGTTTGGTTTCGAAACTACC

upper sequence: AT3G15460.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA18G51310.1 (Glycine max), 3'ss of exon 4
---gtctcattctcacttttgaattgtggacgatccttttgtagtcgcggttagtttggtttatatcttcaacttttaagtt-ttgtttttttgcttacagATTTTTGGAATTCCCGAGGGACATAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATATATGGTTCCGTAATTACC
   |  |  ||  |  | |  |||| |      | ||  ||   | |     |||   || | |   |   |||  ||   | ||  ||| ||   | ||||| |||| ||  ||  |||  || || ||| |||| |||| |||||| || || ||||||||||| || ||||||||||||||||||||||| |||||||
catgcatgttttcctgtctacaattttctctatttctgatgctcttgtc-caagtactgtatttgattattactgatatactatttctttcttttattcagATATTTGAAACACCAAAGGACCACAGAAAGGCTAAGCCTTTCCATGATCACGTTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTACC

upper sequence: AT3G15460.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA08G28320.2 (Glycine max), 3'ss of exon 5
gtctcattctcacttttgaattgtggacgatccttttgtagtcgcggttagtttggt-ttatatct--tcaacttttaagttttgtttttttgcttacagATTTTTGGAATTCCCGAGGGACATAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATATATGGTTCCGTAATTACC
||  ||| |    |||    |     |   ||  | | |    ||  || |    ||  | ||| |  | |    | |  | ||  ||| |    | ||||| |||| ||  ||  |||  || || ||| | || |||| |||||| || || ||||||||||| || ||||||||||||||||||||||| ||||| |
gttccatgcatcttttcctgtctacaattttctgtatttctatgctcttggccgagtactgtatttgattattgctgatatatttctttctcttcttcagATATTTGAAACACCAAAGGACCACAGAAAGGCCAAGCCTTTCCATGATCACGTTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATC

upper sequence: AT3G15460.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA02G12700.2 (Glycine max), 3'ss of exon 6
----gtctcattctcacttttgaattgtggac---gatccttttgtagtcgcggttagtttggtttatatcttcaacttttaagttttgtttttttgcttacagATTTTTGGAATTCCCGAGGGACATAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATATATGGTTCCGTAATTACC
     | | || |||   |  || |  || |    | |  ||   | ||     ||       |||  ||     | |  |||  |    ||| || ||| ||||| |||| ||  ||  |||  |  || | | |||| || | |||||| || || ||||||||||| || |||||||||||||||||||| || |||||||
tatgatatgatactcttgtccgagtactgtatctgggtgattaaatggtaaaacttcacacaattttgatt----attgctaatatactatttctttctttcagATATTTGAAACACCAAAGGACCTAAGAAGGACTAAGCCATTCCATGATCACGTTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTTCGGAATTACC

upper sequence: AT3G15460.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv07s0005g04550.t01 (Vitis vinifera), 3'ss of exon 4
----gtctcattctcacttttgaattgtg--gacgatccttttgtagtcgcggttagtttggtttatatcttcaacttttaagttttgtttttttgcttacagATTTTTGGAATTCCCGAGGGACATAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATATATGGTTCCGTAATTACC
     |   |  | |  | |   ||| |   |   |||  ||||         | |||||  |     |  | |  |   | ||||| |||||||| |||  ||| ||||||| |||  |||  || |||||  |||||||||| ||||| ||||| |||| ||||||  ||| |||||| |||||||||||||| || ||||
tattttgctaggcaccttctaagattatcttgctcatctatttgcctatata-taagttttatcctcttgataagttgacaggttttttttttttggtta--gATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCATGTCTTTGCTTTCTCACTTGCTGATGATCATATATGGTTCCGGAACTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgcggttagtttggtttatatcttcaacttttaagttttgtttttttgcttacagATTTTTGGAATTCCCGAGGGACATAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATATATGGTTCCGTAATTACC
                                   ttttgtttttttgctt  CT-rich tract
                         aacttttaagttttgt  TA-rich tract