1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgcaaatatttctcagtgtttcaattccattctcgttatagtttaacttgaatctcactggtttctgggttttttcagATCTATGACATATTCCAGCTTCTTCCACCAAAGATCCAAGTTGGTGTGTTCTCCGCAACAATGCCACCAGAAGCTCTTGAGATCACAAGGAAGTTCATGA
species | Arabidopsis thaliana |
transcript | AT3G13920.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTCTCGATGAAGCTGATGAAATGCTCTCCCGTGGTT-CAAGGACCAG ATCTATGACATATTCCAGEST: gi|47829698|gb|CK119382.1|CK119382
genomic: GTTCTCGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGACCAGgtatgcaaat ... gttttttcagATCTATGACATATTCCAG
EST: TTGTTCTCGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGACCAG ATCTATGACATATTCCAGCTTCTTCCACCAAAGATCCAAGTTGGTGTGTTCEST: gi|164080088|gb|ES153605.1|ES153605
genomic: TTGTTCTCGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGACCAGgtatgcaaat ... gttttttcagATCTATGACATATTCCAGCTTCTTCCACCAAAGATCCAAGTTGGTGTGTTC
EST: GTTCTCGATGGAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGACCAG ATCTATGACATATTCCAGEST: gi|47831463|gb|CK121147.1|CK121147
genomic: GTTCTCGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGACCAGgtatgcaaat ... gttttttcagATCTATGACATATTCCAG
EST: TTGTTCTCGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGACCAG ATCTATGACATATTCCAGCTTCTTCCACCAAAGATCCAAGTTGGTGTGTTCEST: gi|116436248|gb|EG478840.1|EG478840
genomic: TTGTTCTCGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGACCAGgtatgcaaat ... gttttttcagATCTATGACATATTCCAGCTTCTTCCACCAAAGATCCAAGTTGGTGTGTTC
EST: TTGTTCTCGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGACCTG ATCTATGACATATTCCAGCTTCTTCCACCAAAGATCCAAGTTGGTGTGTTCEST: gi|86034879|gb|DR330632.1|DR330632
genomic: TTGTTCTCGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGACCAGgtatgcaaat ... gttttttcagATCTATGACATATTCCAGCTTCTTCCACCAAAGATCCAAGTTGGTGTGTTC
EST: TTGTTCTCGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGACCAG ATCTATGACATATTCCAGCTTCTTCCACCAAAGATCCAAGTTGGTGTGTTC
genomic: TTGTTCTCGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGACCAGgtatgcaaat ... gttttttcagATCTATGACATATTCCAGCTTCTTCCACCAAAGATCCAAGTTGGTGTGTTC
attccattctcgttatagtttaacttgaatctcactggtttctgggttttttcagATCTATGACATATTCCAGCTTCTTCCACCAAAGATCCAAGTTGGTGTGTTCTCCGCAACAATGCCACCAGAAGCTCTTGAGATCACAAGGAAGTTCATGA
atctcac putative branch site (score: 3)
ttttttc putative PPT
ttatagtttaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcaaatatttctcagtgtttcaattccattctcgttatagtttaacttgaatctcactggtttctgggttttttcagATCTATGACATATTCCAGCTTCTTCCACCAAAGATCCAAGTTGGTGTGTTCTCCGCAACAATGCCACCAGAAGCTCTTGAGATCACAAGGAAGTTCATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA