1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gcaagtgtttcttgtcagggttatcatccatatttcaactaaatcttctcttgatatctcatcagtaacatataccacaaatctctgtaatatgtatgagtggtgaataaggtttttcattcctccatactgtctatgcataacttaaacttgctgcagTTCCTGGTAGGAACGCTTGTGAGATACACATGGTTCACCAGGAGGATGCTGGATTAAATGTTGAGATGGCAAAGCTTGCTTTCTCAAGAGGCATATGGAG
species | Arabidopsis thaliana |
transcript | AT3G13062.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAAGTATGTACGTGTAAGTTATTTCAGATCTGGTTGGCGAATTAGGAAAG TTCCTGGTAGGAACGCTTGTGAGATACACATGGTTCACCAGGAGGATGCTGEST: gi|124781270|gb|EH871213.1|EH871213
genomic: GAAGTATGTACGTGTAAGTTATTTCAGATCTGGTTGGCGAATTAGGAAAGgcaagtgttt ... cttgctgcagTTCCTGGTAGGAACGCTTGTGAGATACACATGGTTCACCAGGAGGATGCTG
EST: GAAGTATGTACGTGTAAGTTATTTCAGATCTGGTTGGCGAATTAGGAAAG TTCCTGGTAGGAACG
genomic: GAAGTATGTACGTGTAAGTTATTTCAGATCTGGTTGGCGAATTAGGAAAGgcaagtgttt ... cttgctgcagTTCCTGGTAGGAACG
gaataaggtttttcattcctccatactgtctatgcataacttaaacttgctgcagTTCCTGGTAGGAACGCTTGTGAGATACACATGGTTCACCAGGAGGATGCTGGATTAAATGTTGAGATGGCAAAGCTTGCTTTCTCAAGAGGCATATGGAG
gcataac putative branch site (score: 3)
ataacttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtgtttcttgtcagggttatcatccatatttcaactaaatcttctcttgatatctcatcagtaacatataccacaaatctctgtaatatgtatgagtggtgaataaggtttttcattcctccatactgtctatgcataacttaaacttgctgcagTTCCTGGTAGGAACGCTTGTGAGATACACATGGTTCACCAGGAGGATGCTGGATTAAATGTTGAGATGGCAAAGCTTGCTTTCTCAAGAGGCATATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG