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gtcagatagaagttatggtcacatttgtctaaatctcttagcttttaatagtgtctttctggtgcatgtttccattgttctttctctattctgcatgctacatttggttgttcttagggatgtagctgtctgactatgtttgttatgatttgaaactgcagGCACTATCTGAACTGCATGACCGAATCCCTCCCTTTCCCTGGCCTGAGGCTGTAAAAATCCTTGAAGGGGAATTAGGTGGTCCTGTCGAATCATTCTTTA
species | Arabidopsis thaliana |
transcript | AT2G39190.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCAATCGCTTTCCACGAGGCCAGATATCATTGGGACTGAAATCTCCAAG GCACTATCTGAACTGCATGACCGAATCCCTCCCTTTCCCTGGCCTGAGGCTEST: gi|124820499|gb|EH905365.1|EH905365
genomic: GTCAATCGCTTTCCACGAGGCCAGATATCATTGGGACTGAAATCTCCAAGgtcagataga ... gaaactgcagGCACTATCTGAACTGCATGACCGAATCCCTCCCTTTCCCTGGCCTGAGGCT
EST: TCATTGGGACTGAAATCTCCAAG GCACTATCTGAACTGCATGACCGAATCCCTCCCTTTCCCTGGCCTGAGGCT
genomic: TCATTGGGACTGAAATCTCCAAGgtcagataga ... gaaactgcagGCACTATCTGAACTGCATGACCGAATCCCTCCCTTTCCCTGGCCTGAGGCT
gttgttcttagggatgtagctgtctgactatgtttgttatgatttgaaactgcagGCACTATCTGAACTGCATGACCGAATCCCTCCCTTTCCCTGGCCTGAGGCTGTAAAAATCCTTGAAGGGGAATTAGGTGGTCCTGTCGAATCATTCTTTA
gtctgac putative branch site (score: 3)
ttatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagatagaagttatggtcacatttgtctaaatctcttagcttttaatagtgtctttctggtgcatgtttccattgttctttctctattctgcatgctacatttggttgttcttagggatgtagctgtctgactatgtttgttatgatttgaaactgcagGCACTATCTGAACTGCATGACCGAATCCCTCCCTTTCCCTGGCCTGAGGCTGTAAAAATCCTTGAAGGGGAATTAGGTGGTCCTGTCGAATCATTCTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG