1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttaatcccatttactccgatatagatgaaaatattcatatacttaatgtgttctcacaaaacgtgttgttcacgtttgatcattgaaggctaatgtttgattggtgtctaatggttgaatgtagATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCATTGCAACACCGTGGAAATTGGCACGCCGACTTGCTGGATTGTTGTTCAGAA
species | Arabidopsis thaliana |
transcript | AT2G17780.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAGATGATTTGTATGACACGGATAGTAGTAGTATTCGAGCAGATTCAAG ATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCACTEST: gi|116390739|gb|EG433331.1|EG433331
genomic: AGAGATGATTTGTATGACACGGATAGTAGTAGTATTCGAGCAGATTCAAGgttaatccca ... ttgaatgtagATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCATT
EST: AGAGATGATTTGTATGACACGGATAGTAGTAGTATTCGAGCAGATTCAAG ATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCATTEST: gi|116401257|gb|EG443849.1|EG443849
genomic: AGAGATGATTTGTATGACACGGATAGTAGTAGTATTCGAGCAGATTCAAGgttaatccca ... ttgaatgtagATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCATT
EST: AGAGATGATTTGTATGACACGAATAGTAGTAGTATTCGAGCAGATTCAAG ATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCATTEST: gi|116401256|gb|EG443848.1|EG443848
genomic: AGAGATGATTTGTATGACACGGATAGTAGTAGTATTCGAGCAGATTCAAGgttaatccca ... ttgaatgtagATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCATT
EST: AGAGATGATTTGTATGACACGAATAGTAGTAGTATTCGAGCAGATTCAAG ATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCATTEST: gi|116401254|gb|EG443846.1|EG443846
genomic: AGAGATGATTTGTATGACACGGATAGTAGTAGTATTCGAGCAGATTCAAGgttaatccca ... ttgaatgtagATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCATT
EST: AGAGATGATTTGTATGACACGAATAGTAGTAGTATTCGAGCAGATTCAAG ATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCATTEST: gi|116401369|gb|EG443961.1|EG443961
genomic: AGAGATGATTTGTATGACACGGATAGTAGTAGTATTCGAGCAGATTCAAGgttaatccca ... ttgaatgtagATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCATT
EST: AGAGATGATTTGTATGACACGGATAGTAGTAGTATTCGAGCAGATTCAAG ATCAACATCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCATTEST: gi|116401253|gb|EG443845.1|EG443845
genomic: AGAGATGATTTGTATGACACGGATAGTAGTAGTATTCGAGCAGATTCAAGgttaatccca ... ttgaatgtagATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCATT
EST: AGAGATGATTTGTATGACACGGATAGTAGTAGTATTCGAGCAGATTCAAG ATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCATTEST: gi|116401252|gb|EG443844.1|EG443844
genomic: AGAGATGATTTGTATGACACGGATAGTAGTAGTATTCGAGCAGATTCAAGgttaatccca ... ttgaatgtagATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCATT
EST: AGAGATGATTTGTATGACACGGATAGTAGTAGTATTCGAGCAGATTCAAG ATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCATTEST: gi|116401259|gb|EG443851.1|EG443851
genomic: AGAGATGATTTGTATGACACGGATAGTAGTAGTATTCGAGCAGATTCAAGgttaatccca ... ttgaatgtagATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCATT
EST: AGAGATGATTTGTATGACTCGGATAGTAGTAGTATTCGAGCAGATTCAAG ATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCATTEST: gi|116401248|gb|EG443840.1|EG443840
genomic: AGAGATGATTTGTATGACACGGATAGTAGTAGTATTCGAGCAGATTCAAGgttaatccca ... ttgaatgtagATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCATT
EST: AGAGATGATTTGTATGACACGGATAGTAGTAGTATTCGAGCAGATTCAAG ATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCATT
genomic: AGAGATGATTTGTATGACACGGATAGTAGTAGTATTCGAGCAGATTCAAGgttaatccca ... ttgaatgtagATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCATT
tcacgtttgatcattgaaggctaatgtttgattggtgtctaatggttgaatgtagATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCATTGCAACACCGTGGAAATTGGCACGCCGACTTGCTGGATTGTTGTTCAGAA
gtctaat putative branch site (score: 3)
taatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaatcccatttactccgatatagatgaaaatattcatatacttaatgtgttctcacaaaacgtgttgttcacgtttgatcattgaaggctaatgtttgattggtgtctaatggttgaatgtagATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCATTGCAACACCGTGGAAATTGGCACGCCGACTTGCTGGATTGTTGTTCAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA