1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacatatcgagatttatcttagtgtaatccaattttcattgaccaaactcttatcaaacaatacaaatcgaacgcagTTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATACTGAAGGATGTTGGATACCCAGTTGTAATGGGAAGTGGAGTTGCAGCTGCCTCTACTTATC
species | Arabidopsis thaliana |
transcript | AT2G13360.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGTGGCTGGAAAGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAG TTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATACTGAAGGATGTTEST: gi|125066766|gb|EL133518.1|EL133518
genomic: AAGTGGCTGGAAAGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAGgtacatatcg ... tcgaacgcagTTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATACTGAAGGATGTT
EST: AAGTGGCTGGAAAGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAG TTGCAACTTCTCGGGTGTCTTGCGGGEST: gi|124751701|gb|EH841831.1|EH841831
genomic: AAGTGGCTGGAAAGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAGgtacatatcg ... tcgaacgcagTTGCAACTTCTCGGGTGTCTTGCGGG
EST: TGGCTGGAAAGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAG TTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGEST: gi|125069777|gb|EL135433.1|EL135433
genomic: TGGCTGGAAAGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAGgtacatatcg ... tcgaacgcagTTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAG
EST: AAGTGGCTGGAAAGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAG TTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGAEST: gi|164229638|gb|ES060497.1|ES060497
genomic: AAGTGGCTGGAAAGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAGgtacatatcg ... tcgaacgcagTTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGA
EST: AGTGGCTGGAAAGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAG TTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATACTGAAGGNTGTTEST: gi|124758904|gb|EH849034.1|EH849034
genomic: AGTGGCTGGAAAGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAGgtacatatcg ... tcgaacgcagTTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATACTGAAGGATGTT
EST: AGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAG TTGCAACTTCTCAGGTGTCTTGCGGGAGTGGAGATGATACTGAAGGATGTTEST: gi|124741773|gb|EH832935.1|EH832935
genomic: AGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAGgtacatatcg ... tcgaacgcagTTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATACTGAAGGATGTT
EST: AAATGTGAATGAG TTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATACTGAAGGATGTTEST: gi|125210847|gb|EL225801.1|EL225801
genomic: AAATGTGAATGAGgtacatatcg ... tcgaacgcagTTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATACTGAAGGATGTT
EST: AAGTGGCTGGAAAGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAG TTGCAACTTCTCGGGTGTEST: gi|124757367|gb|EH847497.1|EH847497
genomic: AAGTGGCTGGAAAGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAGgtacatatcg ... tcgaacgcagTTGCAACTTCTCGGGTGT
EST: AAGTGGCTGGAAAGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAG TTGCAACTTCTCGGGTGTCEST: gi|124771954|gb|EH862084.1|EH862084
genomic: AAGTGGCTGGAAAGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAGgtacatatcg ... tcgaacgcagTTGCAACTTCTCGGGTGTC
EST: AAGTGGCTGGAAAGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAG TTGCAACTTCTCGGGTGTEST: gi|124808903|gb|EH894783.1|EH894783
genomic: AAGTGGCTGGAAAGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAGgtacatatcg ... tcgaacgcagTTGCAACTTCTCGGGTGT
EST: AAGTGGCTGGAAAGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAG TTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGEST: gi|124990927|gb|EL063196.1|EL063196
genomic: AAGTGGCTGGAAAGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAGgtacatatcg ... tcgaacgcagTTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAG
EST: GTTTTCAGAATTGGACACCTAGGAAATGTGAANGAG TTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATACTGAAGGATGTTEST: gi|124780999|gb|EH870942.1|EH870942
genomic: GTTTTCAGAATTGGACACCTAGGAAATGTGAATGAGgtacatatcg ... tcgaacgcagTTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATACTGAAGGATGTT
EST: TTGGACACCTAGGAAATGTGAATGAG TTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATACTGAAGGAATGTEST: gi|116473689|gb|EG516281.1|EG516281
genomic: TTGGACACCTAGGAAATGTGAATGAGgtacatatcg ... tcgaacgcagTTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATACTGAAGGA-TGT
EST: AAGTGGCTGGAAAGGTTTTCAGAATTGGACCCCTAGGAAATGTGAATGAG TTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATACTGAAGGATGTT
genomic: AAGTGGCTGGAAAGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAGgtacatatcg ... tcgaacgcagTTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATACTGAAGGATGTT
tgtaatccaattttcattgaccaaactcttatcaaacaatacaaatcgaacgcagTTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATACTGAAGGATGTTGGATACCCAGTTGTAATGGGAAGTGGAGTTGCAGCTGCCTCTACTTATC
cattgac putative branch site (score: 3)
aattttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatatcgagatttatcttagtgtaatccaattttcattgaccaaactcttatcaaacaatacaaatcgaacgcagTTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATACTGAAGGATGTTGGATACCCAGTTGTAATGGGAAGTGGAGTTGCAGCTGCCTCTACTTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC