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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttaaagctattggattttacttaatcttctttacaaacaaaattcaagtgtcaagtttgagttacattagtatgaatttgttttgaaaaacagAAGGTGCACGATCGGCTTTAAGTCTTGGTGGAACAATGATCGGATATTACCCAGTTAGAGTCTTACCTTCAAAAACTGCTATTCTTCCAGTGAATCCCAC

Basic information

species Arabidopsis thaliana
transcript AT1G53650.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G53650.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA15G40060.1 (Glycine max), 3'ss of exon 4
gtaagttaaagctattggattttactta------atcttctttacaaacaaaattcaagtgtcaagtttgagttac---attagtatgaatttgttttgaaaaacagAAGGTGCACGATCGGCTTTAAGTCTTGGTGGAACAATGATCGGATATTACCCAGTTAGAGTCTTACCTTCAAAAACTGCTATTCTTCCAGTGAATCCCAC
||||||     |      ||  |||| |      ||  || |||  |   | | | |  | |  |       | |    |||   |||||||||| || |    |||| |||||| |  | ||| ||| ||||||||| ||  || | ||||| || ||||| || ||  | |||||||||||||| ||||||||||||||||| ||
gtaagtcttgtcctgaaaatcctactcacttcaaattctccttaacacacagacttatttttttaaccaatatcatgcaattttcatgaatttgtgttta----cagATGGTGCAAGGACCGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATCCAGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCAGTGAATCCTAC

upper sequence: AT1G53650.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv19s0176g00140.t01 (Vitis vinifera), 3'ss of exon 4
gtaagtta----aagctattggattttacttaatcttctttacaaacaaaattcaa---gtgtcaagtttgagttacat-tagtatgaatttgttttgaaa-aacagAAGGTGCACGATCGGCTTTAAGTCTTGGTGGAACAATGATCGGATATTACCCAGTTAGAGTCTTACCTTCAAAAACTGCTATTCTTCCAGTGAATCCCAC
|||||||     |   | ||||    ||    || ||  | |         || ||   ||||| |  |    || ||| |  ||   | ||| | |     |||||| |||||  || | || ||||  |||||||| |||||| | || || || |||||||| |||||||||||||| |||||||| ||||| |||||||| ||
gtaagtttttttatttttttgggccataac--atttttctcattggtgttgttgaaagtgtgtctatgtgatttttcatatcatactcacttggtatatgtcaacagATGGTGCGAGAGCAGCATTAAACCTTGGTGGGACAATGCTAGGTTACTATCCAGTTAGGGTCTTACCTTCAAAGACTGCTATCCTTCCTGTGAATCCTAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaattcaagtgtcaagtttgagttacattagtatgaatttgttttgaaaaacagAAGGTGCACGATCGGCTTTAAGTCTTGGTGGAACAATGATCGGATATTACCCAGTTAGAGTCTTACCTTCAAAAACTGCTATTCTTCCAGTGAATCCCAC
                                      tttgtttt  CT-rich tract
                                    aatttgttttgaaaaa  TA-rich tract