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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaaaaaattgacctatatctaaaatttagggttcaattttcctttttattatagagttttttttgttttgaaagaaatatagatgattgagattgagaagggccttttgttatagagtttctctaagttgttatattgcagGCCTGCATGAGCCAAGGGATCACCTACGTGCCTCTATACGATTCTTTAG

Basic information

species Arabidopsis thaliana
transcript AT1G49430.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47831062|gb|CK120746.1|CK120746
EST:     GTTGTGGTATTTACGGAGCTAATTGTCCAGAATGGATTATTGCAATGGAG                         GCCTGCATGAGCCAAGGGATCACCTACGTGCCTCTATACGATTCTTTAG
genomic: GTTGTGGTATTTACGGAGCTAATTGTCCAGAATGGATTATTGCAATGGAGgtaaaaaaaa ... tatattgcagGCCTGCATGAGCCAAGGGATCACCTACGTGCCTCTATACGATTCTTTAG
EST: gi|164205968|gb|EL975042.1|EL975042
EST:     GTTGTGGTATTTATGGAGCTAATTGTCCAGAATGGATTATTGCAATGGAG                         GCCTGCATGAGCCAAGGGA
genomic: GTTGTGGTATTTACGGAGCTAATTGTCCAGAATGGATTATTGCAATGGAGgtaaaaaaaa ... tatattgcagGCCTGCATGAGCCAAGGGA
EST: gi|124853409|gb|EH937846.1|EH937846
EST:     TTGTTGGTATTTACGGAGCTAATTGTCCAGAATGGATTATTGCAATGGAG                         GCCTGCATGAGCCAAGGGATCA
genomic: TTG-TGGTATTTACGGAGCTAATTGTCCAGAATGGATTATTGCAATGGAGgtaaaaaaaa ... tatattgcagGCCTGCATGAGCCAAGGGATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgagattgagaagggccttttgttatagagtttctctaagttgttatattgcagGCCTGCATGAGCCAAGGGATCACCTACGTGCCTCTATACGATTCTTTAG
                                     taagttgttatatt  TA-rich tract