1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaatattctggcctctgaaatttattttctgattatgtggtgtatctttttgaagtgcccgagaagaagataacacctttcttaaattttatagGTACCCCTCAAGACTCTGGGATTTCCTTGCAAACTGTTTTGGAACTCGGACCACTTGTTCCTTTATTTGGAGTATGTATGGGTTTGCAGTGTATAGGAGA
species | Arabidopsis thaliana |
transcript | AT1G25220.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: NNNNNNTCCAAGAGGGGTGTTGATTTCTCCAGGGCCTG GTACCCCTCAAGACTCTGGGATTTCCTTGCAAACTGTTTTGGAACTCGGACEST: gi|124829403|gb|EH913994.1|EH913994
genomic: AAAAAATCCAAGAGGGGTGTTGATTTCTCCAGGGCCTGgtaaatattc ... aattttatagGTACCCCTCAAGACTCTGGGATTTCCTTGCAAACTGTTTTGGAACTCGGAC
EST: TCCAAGAGGGGTGTTGATTTCTCCAGGGCCTG GTACCCCTCAAGACTCTGGGATTTCCTTGCAAACTGTTTTGGAACTCGGACEST: gi|125015645|gb|EL087914.1|EL087914
genomic: TCCAAGAGGGGTGTTGATTTCTCCAGGGCCTGgtaaatattc ... aattttatagGTACCCCTCAAGACTCTGGGATTTCCTTGCAAACTGTTTTGGAACTCGGAC
EST: AAATCCAAGAGGGGTGTTGATTTCTCCAGGGCCTG GTACCCCTCAAGACTCTGGGATTTCCTTGCAAACTGTTTTGGAACTCGGAC
genomic: AAATCCAAGAGGGGTGTTGATTTCTCCAGGGCCTGgtaaatattc ... aattttatagGTACCCCTCAAGACTCTGGGATTTCCTTGCAAACTGTTTTGGAACTCGGAC
gtgtatctttttgaagtgcccgagaagaagataacacctttcttaaattttatagGTACCCCTCAAGACTCTGGGATTTCCTTGCAAACTGTTTTGGAACTCGGACCACTTGTTCCTTTATTTGGAGTATGTATGGGTTTGCAGTGTATAGGAGA
agataac putative branch site (score: 3)
tttcttaaattttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatattctggcctctgaaatttattttctgattatgtggtgtatctttttgaagtgcccgagaagaagataacacctttcttaaattttatagGTACCCCTCAAGACTCTGGGATTTCCTTGCAAACTGTTTTGGAACTCGGACCACTTGTTCCTTTATTTGGAGTATGTATGGGTTTGCAGTGTATAGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA