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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttcactaagatcttctttctctatatctttttatttctttctaattgtggaaatgttgattgtaaatctggacttttcagttgtccagattaaaaatgaggctccttaatgctggttgtggtctcacttctgcatggagattgtgtgattttcaaaagctgacatgagtattaccttctcatcttatgcagATCTCTATCAAAAACAATTCACTGGTCCTTTCTAATGTCTGTTTTCACG

Basic information

species Arabidopsis thaliana
transcript AT1G16040.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19878887|gb|AU239718.1|AU239718
EST:     CTTATAAATGCTTTGGGAGCTGTTTCTTTGGGTGCACCTATTGGAATGCA                         ATCTCTATCAAAAACAATTCACTGGTCCTTTCTAATGTCTGTTTTCACG
genomic: CTTATAAATGCTTTGGGAGCTGTTTCTTTGGGTGCACCTATTGGAATGCAgtatgtttca ... tcttatgcagATCTCTATCAAAAACAATTCACTGGTCCTTTCTAATGTCTGTTTTCACG
EST: gi|164140841|gb|ES121203.1|ES121203
EST:     CTTATAAATGCTTTGGGAGCTGTTTCTTTGGGTGCACCTATTGGAATGCA                         ATCTCTATCAA
genomic: CTTATAAATGCTTTGGGAGCTGTTTCTTTGGGTGCACCTATTGGAATGCAgtatgtttca ... tcttatgcagATCTCTATCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagattgtgtgattttcaaaagctgacatgagtattaccttctcatcttatgcagATCTCTATCAAAAACAATTCACTGGTCCTTTCTAATGTCTGTTTTCACG
                    agctgac  putative branch site (score: 3)
                                  ttaccttctcatctt  putative PPT
           attttcaaaa  TA-rich tract