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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttcacaatcagaatgctaaaattgcttgagatactaactaactatgtgttctgtttctacagGTTCCTCTGTTTGCTAATATGGATGAAAGATTACTTGACGCAATCTGTGAGAGATTAAAGCCGAGTCTTTTCACGGAAAGCACTTACATTGTGCGTGAAG

Basic information

species Arabidopsis thaliana
transcript AT1G15990.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15990.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv09s0018g00410.t01 (Vitis vinifera), 3'ss of exon 6
gtaagttttc-acaatcagaatgc---taaaattgcttgagatactaactaactatgtgttctgtttctaca-------gGTTCCTCTGTTTGCTAATATGGATGAAAGATTACTTGACGCAATCTGTGAGAGATTAAAGCCGAGTCTTTTCACGGAAAGCACTTACATTGTGCGTGAAG
||| ||  || | | |  | ||||   |  | |   |        | |  ||  || |  |  || | ||||       ||||||||||||||| ||||||||||||||||| ||||| || || ||||||||  |  | |||||| | ||||||||||  |||||||| ||||| ||||
gtacgtagtctatactttggatgcctatggattcattccttcctttgataaaaaatcttattagtatatacatatgcaagGTTCCTCTGTTTGCAAATATGGATGAAAGATTGCTTGATGCCATTTGTGAGAGGCTGCAACCGAGTTTATTCACGGAAAAAACTTACATAGTGCGGGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagaatgctaaaattgcttgagatactaactaactatgtgttctgtttctacagGTTCCTCTGTTTGCTAATATGGATGAAAGATTACTTGACGCAATCTGTGAGAGATTAAAGCCGAGTCTTTTCACGGAAAGCACTTACATTGTGCGTGAAG
                                         ttctgtttct  CT-rich tract
         taaaatt  TA-rich tract