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gttttttgtctaaactacttgtcgtttgtccttttgctgacttgtcacaatttatttatattatccttttattaatttctgtgttttcttaaaaaaatatttttattttaatattttgaagAATGCAATGTGGCTGGACTGTGGAAGATTGTTACTTGGAATCGGCGTTGGTATATTTAGCTACGTG
species | Arabidopsis thaliana |
transcript | AT1G08930.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTGCGAATTCTTCTGTATCACAGGCTGGCTTTGTGTAGCATTGGCTCAG AATGCAATGTGEST: gi|124825398|gb|EH910264.1|EH910264
genomic: TTTGCGAATTCTTCTGTATCACAGGCTGGCTTTGTGTAGCATTGGCTCAGgttttttgtc ... tattttgaagAATGCAATGTG
EST: TGGCTTTGTGTAGCATTGGCTCAG AATGCAATGTGGCTGGACTGTGGAAGATTGTTACTTGGAATCGGCGTTGGTEST: gi|124910899|gb|EH984979.1|EH984979
genomic: TGGCTTTGTGTAGCATTGGCTCAGgttttttgtc ... tattttgaagAATGCAATGTGGCTGGACTGTGGAAGATTGTTACTTGGAATCGGCGTTGGT
EST: CGAATTCTTCTGTATCACAGGCTGGCTTTGTGTAGCATTGGCTCAG AATGCAATGTGGCTGGACTGTGGAAGATTGTTACTTGGAATCGGCGTT
genomic: CGAATTCTTCTGTATCACAGGCTGGCTTTGTGTAGCATTGGCTCAGgttttttgtc ... tattttgaagAATGCAATGTGGCTGGACTGTGGAAGATTGTTACTTGGAATCGGCGTT
ttttattaatttctgtgttttcttaaaaaaatatttttattttaatattttgaagAATGCAATGTGGCTGGACTGTGGAAGATTGTTACTTGGAATCGGCGTTGGTATATTTAGCTACGTG
tgttttcttaaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttttgtctaaactacttgtcgtttgtccttttgctgacttgtcacaatttatttatattatccttttattaatttctgtgttttcttaaaaaaatatttttattttaatattttgaagAATGCAATGTGGCTGGACTGTGGAAGATTGTTACTTGGAATCGGCGTTGGTATATTTAGCTACGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA