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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagtatttttttttcttcttttgttaattctatccattgcattactatttgtttcccctttccctcaaactcctacaatttctatgttctcatcagtcaaaaacattttcagttctggtctcgcaatcatgttgcatagagatttatgtgccatcttgatggcttcatctgctgcaatgtatagGCAGCCCTGTTCTTGGGTATTTGGCAGCTGGAATTCTGATTGGTCCGTATGGTCTTTCGATAATCCGTAATGTGCACGGAACCAGGGCCATCGCAGAATT

Basic information

species Arabidopsis thaliana
transcript AT1G01790.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G01790.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv15s0046g03390.t01 (Vitis vinifera), 3'ss of exon 2
gtaagtagtatttttttttcttcttttgttaattctatccattgcattactatttgtttcccctttccctcaaactcctacaatttctatgttctcatcagtcaaaaacattttcagttctggtctcgcaatcatgttgc-atagagatttatgtgccatcttgatggcttcatctgctgcaatgtatagGCAGCCCTGTTCTTGGGTATTTGGCAGCTGGAATTCTGATTGGTCCGTATGGTCTTTCGATAATCCGTAATGTGCACGGAACCAGGGCCATCGCAGAATT
                                                                                        || |     ||| |         ||||  |||     |      || ||| |  ||  | || || ||  |   ||     | ||||||||||| ||| ||||||| ||||||||||| || ||||| ||||| ||  ||||||| || |||||||| || || || ||| |||| || || ||||  || || ||||||||
--------------------------------------------------------------------------------------gcatatatatgtcactgtgccttcatttcctttcaaagtttattgccaagtttctgtactgtttcat-tgatagtgtgtc--ttccatctgctgca-tgtttagGCAGTCCTGTTCTTGGTTACTTGGCTGCTGGTATCTTGATTGGGCCTTATGGTCTCTCTATTATTCGTCATGTACATGGGACCAAAGCGATTGCAGAATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgcatagagatttatgtgccatcttgatggcttcatctgctgcaatgtatagGCAGCCCTGTTCTTGGGTATTTGGCAGCTGGAATTCTGATTGGTCCGTATGGTCTTTCGATAATCCGTAATGTGCACGGAACCAGGGCCATCGCAGAATT
                        tcttgat  putative branch site (score: 4)
          agatttat  TA-rich tract