1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtactaaaaccaatgacgaaaccatttatgtgaattttattttgtggcttcaacaacttgtatttgatgtttcagATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGTCTCTAAGTTACAAAACCAAGACACCAATAGGCAAAAACAGGAAGCTAAG
species | Arabidopsis thaliana |
transcript | AT5G62240.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAAGGCAGAACAAACCTTTAGATATTTACTCTGTTCAACTTCTGACAAG ATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGTEST: gi|116430576|gb|EG473168.1|EG473168
genomic: GCAAGGCAGAACAAACCTTTAGATATTTACTCTGTTCAACTTCTGACAAGgtactaaaac ... gatgtttcagATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGT
EST: GCAAGGCAGAACAAACCTTTAGATATTTACTCTGTTCAACTTCTGACAAG ATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGTEST: gi|116430569|gb|EG473161.1|EG473161
genomic: GCAAGGCAGAACAAACCTTTAGATATTTACTCTGTTCAACTTCTGACAAGgtactaaaac ... gatgtttcagATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGT
EST: GCAAGGCAGAACAAACCTTTAGATATTTACTCTGTTCAACTTCTGACAAG ATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGTEST: gi|116430567|gb|EG473159.1|EG473159
genomic: GCAAGGCAGAACAAACCTTTAGATATTTACTCTGTTCAACTTCTGACAAGgtactaaaac ... gatgtttcagATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGT
EST: GCAAGGCAGAACAAACCTTTAGATATTTACTCTGTTCAACTTCTGACAAG ATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGTEST: gi|116430565|gb|EG473157.1|EG473157
genomic: GCAAGGCAGAACAAACCTTTAGATATTTACTCTGTTCAACTTCTGACAAGgtactaaaac ... gatgtttcagATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGT
EST: GCAAGGCGGAACAAACCTTTAGATATTTACTCTGTTCAACTTCTGACAAG ATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGTEST: gi|116430571|gb|EG473163.1|EG473163
genomic: GCAAGGCAGAACAAACCTTTAGATATTTACTCTGTTCAACTTCTGACAAGgtactaaaac ... gatgtttcagATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGT
EST: GCAAGGCAGAACAAACCTTTAGATATTTACTCTGTTCAACTTCTGACAAG ATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGCEST: gi|116430578|gb|EG473170.1|EG473170
genomic: GCAAGGCAGAACAAACCTTTAGATATTTACTCTGTTCAACTTCTGACAAGgtactaaaac ... gatgtttcagATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGT
EST: GCAAGGCAGAACAAACCTTTAGATATTTACTCTGTTCAACTTCTGACAAG ATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGTEST: gi|116430582|gb|EG473174.1|EG473174
genomic: GCAAGGCAGAACAAACCTTTAGATATTTACTCTGTTCAACTTCTGACAAGgtactaaaac ... gatgtttcagATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGT
EST: GCAAGGCAGAACAAACCTTTAGATATTTACTCTGTTCAACTTCTGACAAG ATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGTEST: gi|116430585|gb|EG473177.1|EG473177
genomic: GCAAGGCAGAACAAACCTTTAGATATTTACTCTGTTCAACTTCTGACAAGgtactaaaac ... gatgtttcagATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGT
EST: GCAAGGCAGAACAAACCTTTAGATATTTACTCTGTTCAACTTCTGACAAG ATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGTEST: gi|116430580|gb|EG473172.1|EG473172
genomic: GCAAGGCAGAACAAACCTTTAGATATTTACTCTGTTCAACTTCTGACAAGgtactaaaac ... gatgtttcagATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGT
EST: GCAAGGCAGAACAAACCTTTAGATATTTACTCTGTTCAACTTCTGACAAG ATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGT
genomic: GCAAGGCAGAACAAACCTTTAGATATTTACTCTGTTCAACTTCTGACAAGgtactaaaac ... gatgtttcagATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGT
accatttatgtgaattttattttgtggcttcaacaacttgtatttgatgtttcagATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGTCTCTAAGTTACAAAACCAAGACACCAATAGGCAAAAACAGGAAGCTAAG
atttgat putative branch site (score: 5)
ttatgtgaattttatt TA-rich tract