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gtaagttaatcctttaagttactgttttataggataaggttaccaataattggtcttattttatgtatctttggttttccgggtgtgtagCTTGCTTCAGGGGAAGTATTTGGTCCAGATCAACCCATTGCATTGAAACTGCTAGGATCAGAGAGATCAATTCAAGCTCTTGAAGGTGTTGCAATGGAAC
species | Arabidopsis thaliana |
transcript | AT5G58330.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACGACGTCGCCTTTTCTCAACTCTTCGTCTCGGCTTCGTCTCTCTTCAAAATTGCACCTTTCAAACCACTTTCGCCATCTTCTTCTTCCACCTCTCCACACAACAACTCCCAACTCCAAAATCTCTEST: gi|124948332|gb|EL024091.1|EL024091
genomic: ACGACGTCGCCTTTTCTCAACTCTTCGTCTCGGCTTCGTCTCTCTTCAAAATTGCACCTTTCAAACCACTTTCGCCATCTTCTTCTTCCACCTCTCCACACAACAACTCCCAACTCCAAAATCTCT
EST: TGCAGTTTCAGGTGCTGCAGGAATGATTTCTAACCATACTTCTCTTCAAA CTTGCTTCAGGGGAAGTATEST: gi|164233905|gb|ES052709.1|ES052709
genomic: TGCAGTTTCAGGTGCTGCAGGAATGATTTCTAACCAT-CTTCTCTTCAAAgtaagttaat ... gggtgtgtagCTTGCTTCAGGGGAAGTAT
EST: CTAACCATCTTCTCTTCAAA CTTGCTTCAGGGGAAGTATTTGGTCCAGATCAACCCATTGCATTGAAACTGEST: gi|116468405|gb|EG510997.1|EG510997
genomic: CTAACCATCTTCTCTTCAAAgtaagttaat ... gggtgtgtagCTTGCTTCAGGGGAAGTATTTGGTCCAGATCAACCCATTGCATTGAAACTG
EST: ACGACGTCGCCTTTTCTCAACTCTTCGTCTCGGCTTCGTCTCTCTTCAAAATTGCACCTTTCAAACCACTTTCGCCATCTTCTTCTTCCACCTCTCCACACAACAACTCCCAACTCCAAAATCTCTEST: gi|116454058|gb|EG496650.1|EG496650
genomic: ACGACGTCGCCTTTTCTCAACTCTTCGTCTCGGCTTCGTCTCTCTTCAAAATTGCACCTTTCAAACCACTTTCGCCATCTTCTTCTTCCACCTCTCCACACAACAACTCCCAACTCCAAAATCTCT
EST: TTGCAGTTTCAGGTGCTGCAGGAATGATTTCTAACCATCTTCTCTTCAAA CTTGCTTCAGGGGAAGTATTTGGTCCAGATCAACCCATTGCATTGAAACTGEST: gi|125040866|gb|EL113135.1|EL113135
genomic: TTGCAGTTTCAGGTGCTGCAGGAATGATTTCTAACCATCTTCTCTTCAAAgtaagttaat ... gggtgtgtagCTTGCTTCAGGGGAAGTATTTGGTCCAGATCAACCCATTGCATTGAAACTG
EST: ATGATTTCTAACCATCTTCTCTTCAAA CTTGCTTCAGGGGAAGTATTTGGTCCAGATCAACCCATTGCATTGAAACTGEST: gi|125188852|gb|EL203806.1|EL203806
genomic: ATGATTTCTAACCATCTTCTCTTCAAAgtaagttaat ... gggtgtgtagCTTGCTTCAGGGGAAGTATTTGGTCCAGATCAACCCATTGCATTGAAACTG
EST: TGATTTCTAACCATCTTCTCTTCAAA CTTGCTTCAGGGGAAGTATTTGGTCCAGATCAACCCATTGEST: gi|124919736|gb|EH993474.1|EH993474
genomic: TGATTTCTAACCATCTTCTCTTCAAAgtaagttaat ... gggtgtgtagCTTGCTTCAGGGGAAGTATTTGGTCCAGATCAACCCATTG
EST: GGTGCTGCAGGAATGATTTCTAACCATCTTCTCTTCAAA CTTGCTTCAGGGGAAGTATTTGGTCCAGATCAACCCATTGCATTGAAACTGEST: gi|124957772|gb|EL032570.1|EL032570
genomic: GGTGCTGCAGGAATGATTTCTAACCATCTTCTCTTCAAAgtaagttaat ... gggtgtgtagCTTGCTTCAGGGGAAGTATTTGGTCCAGATCAACCCATTGCATTGAAACTG
EST: TTGCAGTTTCAGGTGCTGCAGGAATGATTTCTAACCATCTTCTCTTCAAA CTTGCTTCAGGGGAAGTATTTGEST: gi|164050781|gb|ES006638.1|ES006638
genomic: TTGCAGTTTCAGGTGCTGCAGGAATGATTTCTAACCATCTTCTCTTCAAAgtaagttaat ... gggtgtgtagCTTGCTTCAGGGGAAGTATTTG
EST: CTAACCATCTTCTCTTCAAA CTTGCTTCAGGGGAAGTATTTGGTCCAGATCTAACCCATTGCATTGAAACT
genomic: CTAACCATCTTCTCTTCAAAgtaagttaat ... gggtgtgtagCTTGCTTCAGGGGAAGTATTTGGTCCAGATC-AACCCATTGCATTGAAACT
aaggttaccaataattggtcttattttatgtatctttggttttccgggtgtgtagCTTGCTTCAGGGGAAGTATTTGGTCCAGATCAACCCATTGCATTGAAACTGCTAGGATCAGAGAGATCAATTCAAGCTCTTGAAGGTGTTGCAATGGAAC
ttttccg CT-rich tract
ttattttatgtatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttaatcctttaagttactgttttataggataaggttaccaataattggtcttattttatgtatctttggttttccgggtgtgtagCTTGCTTCAGGGGAAGTATTTGGTCCAGATCAACCCATTGCATTGAAACTGCTAGGATCAGAGAGATCAATTCAAGCTCTTGAAGGTGTTGCAATGGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG