1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgaatgctttactgtttttcaagggtgttagattcgaaactgattaactggtttatttgaaatgtttactgttctcatgtgttttattttgtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGAACGCCCAGGATATCGTGTGGCTCGCCGCCGTAGATGCAAGACTCGTGTT
species | Arabidopsis thaliana |
transcript | AT5G45775.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGEST: gi|164004643|gb|EL970615.1|EL970615
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTG
EST: ATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGAEST: gi|124857617|gb|EH942054.1|EH942054
genomic: ATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: AGCACATTGATCTTGGAATCAA GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGAEST: gi|125102344|gb|EL157133.1|EL157133
genomic: AGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA GTACGATCCTTCCAEST: gi|86063997|gb|DR359754.1|DR359754
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCA
EST: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA GTACGATCCTTCCACTGGTATCTACAGAATGGACTTTTACGTTGTCCTTGAEST: gi|86077797|gb|DR373554.1|DR373554
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGAEST: gi|124812295|gb|EH897161.1|EH897161
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: TGGTATCCAAGAGCACATTGATCTTGGAATCAA GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGAEST: gi|125317910|gb|EL331995.1|EL331995
genomic: TGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: TGCTTTGGATTTGGTATCCAAGAGCACTATTGATCTTGGAATCAAA GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGEST: gi|125313960|gb|EL328045.1|EL328045
genomic: TGCTTTGGATTTGGTATCCAAGAGCAC-ATTGATCTTGGAATC-AAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTG
EST: CACATTGATCTTGGAATCAA GTACGATCCTTCCACTGGTATCTACGGAATGGTCTTTTACGTTGTCCTTGAEST: gi|47828470|gb|CK118154.1|CK118154
genomic: CACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGAEST: gi|164146806|gb|ES184848.1|ES184848
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA GTACGATCCTTCCACEST: gi|47828450|gb|CK118134.1|CK118134
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCAC
EST: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGAEST: gi|86063987|gb|DR359744.1|DR359744
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGAEST: gi|164080779|gb|ES208498.1|ES208498
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGAEST: gi|124974425|gb|EL047984.1|EL047984
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA AEST: gi|124974425|gb|EL047984.1|EL047984
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatag-
EST: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA AEST: gi|86084150|gb|DR379909.1|DR379909
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatag-
EST: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGAEST: gi|164119905|gb|ES145335.1|ES145335
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: TATCCAAGAGCACATTGATCTTGGTAATCAA GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGEST: gi|125112494|gb|EL163562.1|EL163562
genomic: TATCCAAGAGCACATTGATCTTGG-AATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTG
EST: CTTGGAATCAA GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGAEST: gi|163980364|gb|EL973973.1|EL973973
genomic: CTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: GTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA GTACGATCCTTCCACTGGTATCTACGGAATGGACEST: gi|86063981|gb|DR359738.1|DR359738
genomic: GTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGAC
EST: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGAEST: gi|164175092|gb|ES188431.1|ES188431
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: GTATCCAAGAGCACATTGATCTTGGAATCAA GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGAEST: gi|116451722|gb|EG494314.1|EG494314
genomic: GTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGAEST: gi|124989201|gb|EL061534.1|EL061534
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA GTACGATCCTTCCAEST: gi|86064031|gb|DR359788.1|DR359788
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCA
EST: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAA GT-CGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTG-CCTTGAEST: gi|125009955|gb|EL082224.1|EL082224
genomic: ACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
EST: GCACATTGATCTTGGAATCAA GTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
genomic: GCACATTGATCTTGGAATCAAgtaagttttc ... gtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGA
aactggtttatttgaaatgtttactgttctcatgtgttttattttgtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGAACGCCCAGGATATCGTGTGGCTCGCCGCCGTAGATGCAAGACTCGTGTT
gattaac putative branch site (score: 2)
ttttattttgtgtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaatgctttactgtttttcaagggtgttagattcgaaactgattaactggtttatttgaaatgtttactgttctcatgtgttttattttgtgtatatagGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGAACGCCCAGGATATCGTGTGGCTCGCCGCCGTAGATGCAAGACTCGTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - -tcgaaac
- - - - - - - - - - - - - - - - - - - - - - - - -ggtttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttct