1 5' 3' | 2 5' 3' | 3 5' 3' |
gtttttaaattttatgcactcttctttgtatctttgattcatccagacacatacaaacctttctgtcttcttgtattggatcatataaacaccttggtttttgttctctccgcagCGTTTTGGGTGGAATCCTCATCATTTGCGGGCTTTATATGGTTACTTGGGCATCTTACAGAGAGCAACAAACAACATCAGCTGGGAATGAGATTGCTTCT
species | Arabidopsis thaliana |
transcript | AT5G45370.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCGCCTTTTTATCGACAATTTTCCTCGGCAGCCCGATCTATCTTGGAAG CGTTTTGGGTGGAACCCTCATCATTTGCGGGCTTTATATGGTTACTTGGGC
genomic: TCGGCCTTTTTATCGACAATTTTCCTCGGCAGCCCGATCTATCTTGGAAGgtttttaaat ... ctctccgcagCGTTTTGGGTGGAATCCTCATCATTTGCGGGCTTTATATGGTTACTTGGGC
ttctgtcttcttgtattggatcatataaacaccttggtttttgttctctccgcagCGTTTTGGGTGGAATCCTCATCATTTGCGGGCTTTATATGGTTACTTGGGCATCTTACAGAGAGCAACAAACAACATCAGCTGGGAATGAGATTGCTTCT
tttttgttctctccgc CT-rich tract
atcatataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttaaattttatgcactcttctttgtatctttgattcatccagacacatacaaacctttctgtcttcttgtattggatcatataaacaccttggtttttgttctctccgcagCGTTTTGGGTGGAATCCTCATCATTTGCGGGCTTTATATGGTTACTTGGGCATCTTACAGAGAGCAACAAACAACATCAGCTGGGAATGAGATTGCTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG