1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgcatgttttaggtcagagaattagtttgagatatagtgacattttctctacttggttttgtgctgtgttctgattttcatgtgtttggtttttgatcagGTGATTTTTGTTCCACCAGCACCGTTACATCCTCATATTTACAGCAATGGACATATTTGTTTAG
species | Arabidopsis thaliana |
transcript | AT5G42990.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATAATCTTCAGGTTGAGTTTCCTCAACATTATCCTATGGAAGCTCCTCAG GTGATTTTTGTTCCACCAGEST: gi|125038637|gb|EL110906.1|EL110906
genomic: ATAATCTTCAGGTTGAGTTTCCTCAACATTATCCTATGGAAGCTCCTCAGgcaagttttt ... ttttgatcagGTGATTTTTGTTCCACCAG
EST: ATAATCTTCAGGTTGAGTTTCCTCAACATTATCCTATGGAAGCTCCTCAG GTGATTTTTGTTCCACCAGCACCGTTACATCCTCATATTTAC
genomic: ATAATCTTCAGGTTGAGTTTCCTCAACATTATCCTATGGAAGCTCCTCAGgcaagttttt ... ttttgatcagGTGATTTTTGTTCCACCAGCACCGTTACATCCTCATATTTAC
tctctacttggttttgtgctgtgttctgattttcatgtgtttggtttttgatcagGTGATTTTTGTTCCACCAGCACCGTTACATCCTCATATTTACAGCAATGGACATATTTGTTTAG
ttctgat putative branch site (score: 3)
ttttt putative PPT
attttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcatgttttaggtcagagaattagtttgagatatagtgacattttctctacttggttttgtgctgtgttctgattttcatgtgtttggtttttgatcagGTGATTTTTGTTCCACCAGCACCGTTACATCCTCATATTTACAGCAATGGACATATTTGTTTAG
- - -gttttag
- - - - - - - cagagaa
- - - - - - - - - - - -agtttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgg