1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgtctctgttttgatacatttatgtatttctctttacttgactgctaacttgtggagtttggaataatgtagTTTAAAATGCGTGAGGCGCAAATGTGTAATGTTCTCGGTCGTGTTATGCTTGATGCAAAGTCTGCCAAAGCGTTTAAAGAGAAGATTGATGATGAGTATC
species | Arabidopsis thaliana |
transcript | AT5G25100.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGAATCGAAAATGCTCCTTATTCG TTTAAAATGCGTGAGGCGCAAATGTGTAATGTTCTCGGTCGTGTTATGCTTEST: gi|164199577|gb|EL982641.1|EL982641
genomic: CCGAATCGAAAATGCTCCTTATTCGgtttgtctct ... aataatgtagTTTAAAATGCGTGAGGCGCAAATGTGTAATGTTCTCGGTCGTGTTATGCTT
EST: GTGGTGACCGAATCGAAAATGCTCCTTATTCG TTTAAAATGCGTGAGGCGCAAATGTGTAATGTTCTCGEST: gi|163978300|gb|EL974280.1|EL974280
genomic: GTGGTGACCGAATCGAAAATGCTCCTTATTCGgtttgtctct ... aataatgtagTTTAAAATGCGTGAGGCGCAAATGTGTAATGTTCTCG
EST: ATCTTGGTGAAGTTCTTCGTGGTGACCGAATCGAAAATGCTCCTTATTCG TTTAAAATGCGTGAGGCGEST: gi|125043553|gb|EL115822.1|EL115822
genomic: ATCTTGGTGAAGTTCTTCGTGGTGACCGAATCGAAAATGCTCCTTATTCGgtttgtctct ... aataatgtagTTTAAAATGCGTGAGGCG
EST: AAATGCTCCTTATTCG TTTAAAATGCGTGAGGCGCAAATGTGTAATGTTCTCGGTCGTGTTATGCTT
genomic: AAATGCTCCTTATTCGgtttgtctct ... aataatgtagTTTAAAATGCGTGAGGCGCAAATGTGTAATGTTCTCGGTCGTGTTATGCTT
atttatgtatttctctttacttgactgctaacttgtggagtttggaataatgtagTTTAAAATGCGTGAGGCGCAAATGTGTAATGTTCTCGGTCGTGTTATGCTTGATGCAAAGTCTGCCAAAGCGTTTAAAGAGAAGATTGATGATGAGTATC
tgctaac putative branch site (score: 1)
aataatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtctctgttttgatacatttatgtatttctctttacttgactgctaacttgtggagtttggaataatgtagTTTAAAATGCGTGAGGCGCAAATGTGTAATGTTCTCGGTCGTGTTATGCTTGATGCAAAGTCTGCCAAAGCGTTTAAAGAGAAGATTGATGATGAGTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA