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gttaatcaattcatactagttgatactttccaaaattttagccttttgttttgaatccttaactagtttcagttctaattaagaatggttagcattttcatcttactcttgtccctgatgtaaatagGAGGAATTGACCCCCACACGCACCTCGCCATGGAATTTATGGGTACCGAGACTATTGATGATTTCTTCAGTGGTCAGGCAGCGGCATTAGCTGGTGGAAC
species | Arabidopsis thaliana |
transcript | AT5G12200.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGGGATGAAGTCACTGTCCTCGATGCTACTGGAAAGTTTGTCATGCCAG GAGGAATTGACCCC-ACACGCACCTCGCCATGGAATTTATGGGTACCGEST: gi|164084840|gb|ES064491.1|ES064491
genomic: TGGGGATGAAGTCACTGTCCTCGATGCTACTGGAAAGTTTGTCATGCCAGgttaatcaat ... atgtaaatagGAGGAATTGACCCCCACACGCACCTCGCCATGGAATTTATGGGTACCG
EST: TGCTACTGGAAAGTTTGTCATGCCAG GAGGAATTGACCCCCACACGCACCTCGCCATGGAATTTATGGGTACCGAGAEST: gi|124709876|gb|EH801278.1|EH801278
genomic: TGCTACTGGAAAGTTTGTCATGCCAGgttaatcaat ... atgtaaatagGAGGAATTGACCCCCACACGCACCTCGCCATGGAATTTATGGGTACCGAGA
EST: TGGGGATGAAGTCACTGTCCTCGATGCTACTGGAAAGTTTGTCATGCCAG GAGGAATTGACCCC-ACACGCACCTCGCCAT
genomic: TGGGGATGAAGTCACTGTCCTCGATGCTACTGGAAAGTTTGTCATGCCAGgttaatcaat ... atgtaaatagGAGGAATTGACCCCCACACGCACCTCGCCAT
ttctaattaagaatggttagcattttcatcttactcttgtccctgatgtaaatagGAGGAATTGACCCCCACACGCACCTCGCCATGGAATTTATGGGTACCGAGACTATTGATGATTTCTTCAGTGGTCAGGCAGCGGCATTAGCTGGTGGAAC
attaagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaatcaattcatactagttgatactttccaaaattttagccttttgttttgaatccttaactagtttcagttctaattaagaatggttagcattttcatcttactcttgtccctgatgtaaatagGAGGAATTGACCCCCACACGCACCTCGCCATGGAATTTATGGGTACCGAGACTATTGATGATTTCTTCAGTGGTCAGGCAGCGGCATTAGCTGGTGGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA