1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttctgagataaatctttcttctgtgcaccatttcatattgcatctgttttgttttctatcagtaaaagtactaaccgattgattgtcttcaacttttcagGTAGTGGACAACTACTACAGGCCTGATTTGAAGAAAGCAGCACTTGCTAGGCTTAGCGCTATCAGCAAAGGTCTTAGAGTAGCCAAGTCGGGTCCCAAGA
species | Arabidopsis thaliana |
transcript | AT4G29410.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTAAAGTTGTTGCCAATCAG GTAGTGGACAACTACTACAGGCCTGATTTGAAGAAAGCAGCACTTGCTAGGEST: gi|116457661|gb|EG500253.1|EG500253
genomic: GTAAAGTTGTTGCCAATCAGgtactactca ... aacttttcagGTAGTGGACAACTACTACAGGCCTGATTTGAAGAAAGCAGCACTTGCTAGG
EST: CTATCCTCAAGAAGGAGTTCTCGAGGATGAGTAAAGTTGTTGCCAATCAG GTAGTGGACAACTACTACAGGCCTGATTTGAAGAAAGCAGCACTTGCTAGGEST: gi|124950479|gb|EL025940.1|EL025940
genomic: CTATCCTCAAGAAGGAGTTCTCGAGGATGAGTAAAGTTGTTGCCAATCAGgtactactca ... aacttttcagGTAGTGGACAACTACTACAGGCCTGATTTGAAGAAAGCAGCACTTGCTAGG
EST: CGAGGATGAGTAAAGTTGTTGCCAATCAG GTAGTGGACAACTACTACAGGCCTGATTTGAAGAAAGCAGCACTTGCTAGGEST: gi|116457666|gb|EG500258.1|EG500258
genomic: CGAGGATGAGTAAAGTTGTTGCCAATCAGgtactactca ... aacttttcagGTAGTGGACAACTACTACAGGCCTGATTTGAAGAAAGCAGCACTTGCTAGG
EST: CTATCCTCAAGAAGGAGTTCTCGAGGATGAGTAAAGTTGTTGCCAATCAG GTAGTGGACAACTACTACAGGCCTGATTTGAAGAAAGCAGCACTTGCTAGGEST: gi|116457664|gb|EG500256.1|EG500256
genomic: CTATCCTCAAGAAGGAGTTCTCGAGGATGAGTAAAGTTGTTGCCAATCAGgtactactca ... aacttttcagGTAGTGGACAACTACTACAGGCCTGATTTGAAGAAAGCAGCACTTGCTAGG
EST: CTATCCTCAAGAAGGAGTTCTCGAGGATGAGTAAAGTTGTTGCCAATCAG GTAGTGGACAACTACTACAGGCCTGATTTGAAGAAAGCAGCACTTGCTAGGEST: gi|86075084|gb|DR370841.1|DR370841
genomic: CTATCCTCAAGAAGGAGTTCTCGAGGATGAGTAAAGTTGTTGCCAATCAGgtactactca ... aacttttcagGTAGTGGACAACTACTACAGGCCTGATTTGAAGAAAGCAGCACTTGCTAGG
EST: CTATCCTCAAGAAGGAGTTCTCGAGGATGAGTAAAGTTGTTGCCAATCAG GTAGTGGACAACTACTACAGGCCTGATTTGAAGAAAGCAGCACTTGCTAGGEST: gi|116457662|gb|EG500254.1|EG500254
genomic: CTATCCTCAAGAAGGAGTTCTCGAGGATGAGTAAAGTTGTTGCCAATCAGgtactactca ... aacttttcagGTAGTGGACAACTACTACAGGCCTGATTTGAAGAAAGCAGCACTTGCTAGG
EST: CTATCCTCAAGAAGGAGTTCTCGAGGATGAGTAAAGTTGTTGCCAATCAG GTAGTGGACAACTACTACAGACCTGATTTGAAGAAAGCAGCACTTGCTAGGEST: gi|164130572|gb|ES046378.1|ES046378
genomic: CTATCCTCAAGAAGGAGTTCTCGAGGATGAGTAAAGTTGTTGCCAATCAGgtactactca ... aacttttcagGTAGTGGACAACTACTACAGGCCTGATTTGAAGAAAGCAGCACTTGCTAGG
EST: TATCCTCAAGAAGGAGTTCTCGAGGATGAGTAAAGTTGTTGCCCAATCAG GTAGTGGACAACTACTACAGGEST: gi|152038437|gb|AV822896.2|AV822896
genomic: TATCCTCAAGAAGGAGTTCTCGAGGATGAGTAAAGTTGTTGCC-AATCAGgtactactca ... aacttttcagGTAGTGGACAACTACTACAGG
EST: CTATCCTCAAGAAGGAGTTCTCGAGGATGAGTAAAGTTGTTGCCAATCAG GTAGTGGACAACTACTACAGGCCTGATTTGAAGAAAGCAGCACTTGCTAGGEST: gi|116457663|gb|EG500255.1|EG500255
genomic: CTATCCTCAAGAAGGAGTTCTCGAGGATGAGTAAAGTTGTTGCCAATCAGgtactactca ... aacttttcagGTAGTGGACAACTACTACAGGCCTGATTTGAAGAAAGCAGCACTTGCTAGG
EST: CTATCCTCAAGAAGGAGTTCTCGAGGATGAGTAAAGTTGTTGCCAATCAG GTAGTGGACAACTACTACAGACCTGATTTGAAGAAAGCAGCACTTGCTAGGEST: gi|116457659|gb|EG500251.1|EG500251
genomic: CTATCCTCAAGAAGGAGTTCTCGAGGATGAGTAAAGTTGTTGCCAATCAGgtactactca ... aacttttcagGTAGTGGACAACTACTACAGGCCTGATTTGAAGAAAGCAGCACTTGCTAGG
EST: CTATCCTCAAGAAGGAGTTCTCGAGGATGAGTAAAGTTGTTGCCAATCAG GTAGTGGACAACTACTACAGGCCTGATTTGAAGAAAGCAGCACTTGCTAGG
genomic: CTATCCTCAAGAAGGAGTTCTCGAGGATGAGTAAAGTTGTTGCCAATCAGgtactactca ... aacttttcagGTAGTGGACAACTACTACAGGCCTGATTTGAAGAAAGCAGCACTTGCTAGG
gttttgttttctatcagtaaaagtactaaccgattgattgtcttcaacttttcagGTAGTGGACAACTACTACAGGCCTGATTTGAAGAAAGCAGCACTTGCTAGGCTTAGCGCTATCAGCAAAGGTCTTAGAGTAGCCAAGTCGGGTCCCAAGA
cttttc CT-rich tract
ttttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctgagataaatctttcttctgtgcaccatttcatattgcatctgttttgttttctatcagtaaaagtactaaccgattgattgtcttcaacttttcagGTAGTGGACAACTACTACAGGCCTGATTTGAAGAAAGCAGCACTTGCTAGGCTTAGCGCTATCAGCAAAGGTCTTAGAGTAGCCAAGTCGGGTCCCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - -agataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actaacc