1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aacatctaagatttgttggtctttgtagtgtttttttttccttctattgtcttttctggagattgtgaatttgtgatgtatgattgttttctccatgcagGTTCTGAGTGGTATAAACGTGGGTAGCAACTGCGGTTATAACAT
species | Arabidopsis thaliana |
transcript | AT4G14930.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCACTGGTTTGGGCTTATCGGAAGCACTCTTTCCTTCTCGTCCTGACCTG GTTCTAGAAGTGGTATAAACGTGGGTAGCAACTGCGGTTATAACAEST: gi|125097952|gb|EL154247.1|EL154247
genomic: GCACTGGTTTGGGCTTATCGGAAGCACTCTTTCCTTCTCGTCCTGACCTGgtaaaccata ... ctccatgcagGTTCT-GA-GTGGTATAAACGTGGGTAGCAACTGCGGTTATAACA
EST: GCACTGGTTTGGGCTTATCGGAAGCACTCTTTCCTTCTCGTCCTGACCTG GTTCTGAGTGGTATAAACGTGGGTAGCAACTGCG
genomic: GCACTGGTTTGGGCTTATCGGAAGCACTCTTTCCTTCTCGTCCTGACCTGgtaaaccata ... ctccatgcagGTTCTGAGTGGTATAAACGTGGGTAGCAACTGCG
attgtcttttctggagattgtgaatttgtgatgtatgattgttttctccatgcagGTTCTGAGTGGTATAAACGTGGGTAGCAACTGCGGTTATAACAT
ttgttttctcc CT-rich tract
attgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacatctaagatttgttggtctttgtagtgtttttttttccttctattgtcttttctggagattgtgaatttgtgatgtatgattgttttctccatgcagGTTCTGAGTGGTATAAACGTGGGTAGCAACTGCGGTTATAACAT
- catctaa
- - - - -gatttgt