Sequence
atgc intronic sequence ATGC exonic sequencegtacggtttttactctgctatatttgatactatggttgatttaatcacaagtgattcactttttcttcttttgcagTACTTCTTGTATCAGATTCTACGAGGACTCAAATATATTCATTCAGCAAATGTTTTACATCGTGACCTTAAGCCGAGTAATTTGCTTTTGAATTCGAATT
Basic information
| species | Arabidopsis thaliana |
| transcript | AT4G11330.1 |
| intron # | 3 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G11330.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G127141_T01 (Zea mays), 3'ss of exon 3
------------------gtacggtttttactctgctatatttgata-ctatggttgatttaatcacaagtgattcactttttcttctttt-----gcagTACTTCTTGTATCAGATTCTACGAGGACTCAAATATATTCATTCAGCAAATGTTTTACATCGTGACCTTAAGCCGAGTAATTTGCTTTTGAATTCGAATT
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acaaagaactatattttggtacggagggagtaatatattgcttcacaacaatgatatattctataatctatatttctatgttccccctttttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAATATATTGCACCGCGATCTGAAGCCGAGCAATTTGTTCCTAAATGCAAATTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125025671|gb|EL097940.1|EL097940EST: TTCATCAGATTATTCGATCAAACCAATCTTTGAATGATGATCATTGTCAG TACTTCTTGTAT
genomic: TTCATCAGATTATTCGATCAAACCAATCTTTGAATGATGATCATTGTCAGgtacggtttt ... tcttttgcagTACTTCTTGTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttgatactatggttgatttaatcacaagtgattcactttttcttcttttgcagTACTTCTTGTATCAGATTCTACGAGGACTCAAATATATTCATTCAGCAAATGTTTTACATCGTGACCTTAAGCCGAGTAATTTGCTTTTGAATTCGAATT
atttaat putative branch site (score: 4)
ttcactttttcttctt putative PPT
ttgatttaat TA-rich tract
