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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtctgtcttcctctgcttttttttctgttgaacaattataatttctttggtcacattaagagaatatgaaaccaaatgtaaaggttggattcatacggttgagaattggtttatcacttaggatgtcaaagaataaacctttggttgcaactctgtgcagGCGAACTACAAAGACTAGCAGGTGCCTTAATTTGGGTTCCTACAATTATCTTGGATTTGGTTCTTTCGATGAATATTGCACGCCTCGTGTCATTGAGTCT

Basic information

species Arabidopsis thaliana
transcript AT3G48780.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G48780.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os01g70370.1 (Oryza sativa), 3'ss of exon 3
gtgagtctgtcttcctctgcttttttttctgttgaacaattataatttctttggtcacattaagagaatatgaaaccaaatgtaaaggttggattcatacggttgagaattggtttatcacttaggatgtcaaagaataaacctttggttgcaactctgtgcagGCGAACTACAAAGACTAGCAGGTGCCTTAATTTGGGTTCCTACAATTATCTTGGATTTGGTTCTTTCGATGAATATTGCACGCCTCGTGTCATTGAGTCT
                                          ||||     |   || ||   | | ||||  | |  |||   |     |||| ||| |   |   ||||  | |  | |              |||    || || |        | ||||| || || ||||| ||   |||||||||||| || |||||||||||||| ||||| |||| | |    |||||||| ||||| |||||||| |||||||| 
----------------------------------------cctaataagcataagcaaatgctgcggatatatatcttaattatattagaggatgcatgc---tagaaattaatctgaccc--------------aatgcttctctgata-------tatgcagCCGTACCACAAAAACATCCAGGTGCCTTAACTTAGGTTCCTACAATTACCTTGGCTTTGCTGCGGCAGATGAATACTGCACTCCTCGTGTTATTGAGTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86069043|gb|DR364800.1|DR364800
EST:     TGGATTGATGTGGTTGAGAGAGTCTCTGATGACAACAACAAGACGCTAAA                         GCGAACTACAAAGACTAGCAGGTGCCTTAATTTGGGTTCCTACAATTATCT
genomic: TGGATTGATGTGGTTGAGAGAGTCTCTGACGATAACAACAAGACGTTAAAgtgagtctgt ... ctctgtgcagGCGAACTACAAAGACTAGCAGGTGCCTTAATTTGGGTTCCTACAATTATCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtttatcacttaggatgtcaaagaataaacctttggttgcaactctgtgcagGCGAACTACAAAGACTAGCAGGTGCCTTAATTTGGGTTCCTACAATTATCTTGGATTTGGTTCTTTCGATGAATATTGCACGCCTCGTGTCATTGAGTCT
                      aaagaataaa  TA-rich tract