Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttttcttattgttttgcctttcagattatgtcttgtctgttaccgtaagagaaaatggtttctgagcagctcatattatgtttttgcagAGAATGGTACTCATGGCACTTCCCTGAGCTTGTCAAGATAGTTAATGACAACTACCTCTACGCCAAAGTTTCAAAGATTATCGTCGACAAGTCAAAGTTG

Basic information

species Arabidopsis thaliana
transcript AT3G12860.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G12860.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G110233_T01 (Zea mays), 3'ss of exon 3
-------------------------------------------------------------gtttgttttcttattgttttgcctttcagattatgtcttgtctgttaccgtaagagaaaatggtttctgagcagctcatattatgtttt-----------tgcagAGAATGGTACTCATGGCACTTCCCTGAGCTTGTCAAGATAGTTAATGACAACTACCTCTACGCCAAAGTTTCAAAGATTATCGTCGACAAGTCAAAGTTG
                                                             |   || ||  ||     |   || | | |  |     ||    |     || |  || ||   || | |  |     ||||   || |           ||||| ||||||| |||||||||||||||||||||||||||||| || |||||||| ||||| || |||||  || | ||| |||| ||  |||| ||  | |||
gtactgtccttgttcatgttctcatataattgtttatggttaacttcttataagcgtaataggccgtatttatagacagtctgctctgatagaaaactctgataatatgaatatgcaaatattccttattatgattatttattgctttctcaataaaacattgcagGGAATGGTTCTCATGGCACTTCCCTGAGCTTGTCAAGATTGTGAATGACAATTACCTTTATGCCAAGCTTGCTAAGTTTATTGTGAACAAATCTGATTTG

upper sequence: AT3G12860.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G144995_T01 (Zea mays), 3'ss of exon 3
--------------------------------gtttgttttcttattgtttt-----------gcctttcagattatgtct-tgtctgt-taccgtaagagaaaatggtttctgagcagctcatattatgtttttgcagAGAATGGTACTCATGGCACTTCCCTGAGCTTGTCAAGATAGTTAATGACAACTACCTCTACGCCAAAGTTTCAAAGATTATCGTCGACAAGTCAAAGTTG
                                ||   |||||| |  |   |             |||| ||  ||||  | || |  | | || |  |    | |  || |||      ||  | ||      ||||| ||||||| |||||||||||||||||||||||||||||| || || ||||| ||||| || |||||  || | ||| |||||||  |||| ||  | |||
gtctgttgcttgttctcctataactgtttattgtcaattttctaagaggcatcataggcagggagctttgaggatatgaatgtgccaatatgcccttggtatgattatttactgttt---tctcaataaaacactgcagGGAATGGTTCTCATGGCACTTCCCTGAGCTTGTCAAGATTGTGAACGACAATTACCTATATGCCAAGCTTGCTAAGTTTATCGTGAACAAATCTGATTTG

upper sequence: AT3G12860.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv17s0000g01720.t01 (Vitis vinifera), 3'ss of exon 3
gtttgttttcttattgttttgcctttcagattatgtcttgt--ctgttaccgtaagagaaaatggtttctgagcagctcatattatgtttt-----tgcagAGAATGGTACTCATGGCACTTCCCTGAGCTTGTCAAGATAGTTAATGACAACTACCTCTACGCCAAAGTTTCAAAGATTATCGTCGACAAGTCAAAGTTG
 |    |    ||   || ||  || || ||      || |   ||||  | ||        || |  ||  | || |   |||   ||||     ||||| ||||||||||| ||||| ||||||||| | || |||||||| ||||||||||| ||||| ||||||||| ||||  || | |   ||||||   |||||
-taaactggagtaaaattctggtttccaaatgggagtttctagttgttttcctatttcttcttgttgacttggtagttttcatttgattttcaatttgcagGGAATGGTACTCTTGGCATTTCCCTGAGTTGGTGAAGATAGTGAATGACAACTATCTCTATGCCAAAGTTGCAAAATTTGTTGAGAACAAGTTGGAGTTG

upper sequence: AT3G12860.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: PP1S15_447V6.1 (Physcomitrella patens), 3'ss of exon 4
---------------------------------------gtttgttttcttattgttttgcctttcagat-tatgtcttgtctgttaccgtaagaga------aaatggtttctgagcagctcatatta--tgttttt---gcagAGAATGGTACTCATGGCACTTCCCTGAGCTTGTCAAGATAGTTAATGACAACTACCTCTACGCCAAAGTTTCAAAGATTATCGTCGACAAGTCAAAGTTG
                                         || |||  || |        |  ||| || | |||||     |||| | | | |        ||||||  |   |     |||  |    ||||| |   | || || |||||||||||||| || || |||||||||||||| || |||||||| |||  |||||| ||  |    ||| | |||   || |||||     | 
gtaggtttttacttcgctgacctaatttgagtaccaaccacttatttgattgtgaaacaatcgctcaaatgtttgtctgcatggttagcattatacgttcctcaaatggaattgtaatccatcacgtgggttgtttgtcgtgtagTGAGTGGTACTCATGGCATTTTCCCGAGCTTGTCAAGATTGTGAATGACAATTACTCCTACGCTAAGCTCGTCAAGTTCATCAAGGATAAGTCCTCTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctgttaccgtaagagaaaatggtttctgagcagctcatattatgtttttgcagAGAATGGTACTCATGGCACTTCCCTGAGCTTGTCAAGATAGTTAATGACAACTACCTCTACGCCAAAGTTTCAAAGATTATCGTCGACAAGTCAAAGTTG
                                            tgttttt  CT-rich tract
                                    tcatattatgttttt  TA-rich tract