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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactaatattttctctttgatctttaaggagaaccttaatcagtcttgacactttttcttacgcaacttttgagaagctgaaatgttggcttcatttttcttttcagTGGCTACAGAGGTTTTCAGCTGGGGAAATGGTGCAAACTACCAACTTGGAACTGGCAATCAACATGTTCAGAAGGTACCAGGGAGAGTTGATTCACTGCA

Basic information

species Arabidopsis thaliana
transcript AT3G03790.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G03790.3 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA16G04300.1 (Glycine max), 3'ss of exon 2
gtaactaatattttctctttgatctttaaggagaaccttaatcagtcttgacactttttcttacgcaacttttgagaagctgaaatgttggcttcatttttcttttcagTGGCTACAGAGGTTTTCAGCTGGGGAAATGGTGCAAACTACCAACTTGGAACTGGCAATCAACATGTTCAGAAGGTACCAGGGAGAGTTGATTCACTGCA
        ||| |  |  |  |  |    |||   | ||    | | ||| |||   | |  | |  | | |  || |  ||| ||  || ||     ||  | || ||||||||| |||||||| || ||||| | ||||||||| || || ||||||||||| |||   ||| |||||||| ||||| | | ||||||||||||   
-------gtatatatttctgtactt----ggaatgcattg--tattgttgtcaccagtacaaa-gtgattatatagga--tgacattctgactcttggttcatctttagTGGCTACTGAGGTTTTTAGTTGGGGCAGTGGTGCAAATTATCAGCTTGGAACTGGAAATGCGCATATTCAGAAGTTACCATGCAAAGTTGATTCACTTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124797782|gb|EH887461.1|EH887461
EST:     CAACAAAGTTCGG                         TGGCTACAGAGGTTTTCAGCTGGGGAAATGGTGCAAACTACCAACTTGGAA
genomic: CAACAAAGTTCGGgtaactaata ... ttcttttcagTGGCTACAGAGGTTTTCAGCTGGGGAAATGGTGCAAACTACCAACTTGGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttcttacgcaacttttgagaagctgaaatgttggcttcatttttcttttcagTGGCTACAGAGGTTTTCAGCTGGGGAAATGGTGCAAACTACCAACTTGGAACTGGCAATCAACATGTTCAGAAGGTACCAGGGAGAGTTGATTCACTGCA
   ttcttac  putative branch site (score: 2)
                                     cttcatttttcttttc  putative PPT
                                      ttcatttttctttt  TA-rich tract