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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagaaacttagaatttctgaaggagagtaccgtttgcttcaaaatgtcttctttcgcatatataattaacagtaaagttggcctttcttgatgtgcagGTCTCTTATACTCTGTTCTGGTGACAGCAGTACTTACCGATGCAATAAAGAATGCAGTTGGTCGACCACGTCCTGACTTCTTCTGGCGTTGTTTTCCAGA

Basic information

species Arabidopsis thaliana
transcript AT3G02600.5
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G02600.5 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA18G53100.2 (Glycine max), 3'ss of exon 3
---------gttagaaacttagaattt------ctgaaggagagtaccgtttgctt--caaaatgtcttctttcgcatatataattaacagtaaagttggcctttcttgatgtgcagGTCTCTTATACTCTGTTCTGGTGACAGCAGTACTTACCGATGCAATAAAGAATGCAGTTGGTCGACCACGTCCTGACTTCTTCTGGCGTTGTTTTCCAGA
          ||||| ||     ||||       ||   |  || |   | |  ||   ||||||      || |   | ||||      | ||| |||   |||  ||  |  ||||| | || | ||| ||| |  | ||||||||| |||| || |||||||| |||||||| |||||||| || || |||||||||||||| |||||||||||
gtattaatttttagatacccctcatttatttaattgctagcaagcatattctatttgttaaaatgaaactgtttgagaagataacag---gaaaaattg---ttttctg--gcacagGTTTATTGTTCTCCGTTTTAATAACAGCAGTATTTACTGAGGCAATAAAAAATGCAGTAGGTCGACCTCGACCAGACTTCTTCTGGCGATGTTTTCCAGA

upper sequence: AT3G02600.5 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA02G09820.1 (Glycine max), 3'ss of exon 3
--gttagaaacttagaatttctgaaggagagtaccgtttgcttcaaaatgtcttctttcgca--tatataatta---acagtaaagttggcctttcttgatgtgcagGTCTCTTATACTCTGTTCTGGTGACAGCAGTACTTACCGATGCAATAAAGAATGCAGTTGGTCGACCACGTCCTGACTTCTTCTGGCGTTGTTTTCCAGA
   ||| |   | |  |   || |   |    |  | | ||    | ||    | | | | |   | |   ||    ||| |||        | | |    |  ||||||| || | |||  || |  | ||  ||||| |||| || || ||||| |||||||| |||||||| ||||| |||||||||||||| |||||||||||
gtattaaattttaaatacccctcatttatttaattggtagcaagcatattctatttgttgaaacgacactgttggagacaataacaggaaattgtttgctggcacagGTCTATTGTTCTCCATTTTAATAACCTCAGTATTTACTGAAGCCATAAAAAATGCAGTAGGTCGACCTCGTCCGGACTTCTTCTGGCGATGTTTTCCAGA

upper sequence: AT3G02600.5 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv14s0006g02480.t01 (Vitis vinifera), 3'ss of exon 2
-----------gttagaaacttagaatttctgaaggagagtaccgtttgctt----caaaatgtcttctttcgcatatataattaacagtaaagttggcctttcttgat-gtgcagGTCTCTTATACTCTGTTCTGGTGACAGCAGTACTTACCGATGCAATAAAGAATGCAGTTGGTCGACCACGTCCTGACTTCTTCTGGCGTTGTTTTCCAGA
            || |   || |   ||| |     | | | ||  |||  |     |  |  |  | | |    |  |  ||| |    |  ||| |  ||  ||| | | ||||| || |||| |||||||||||| ||||  ||  |||| ||||||||||| ||||||||||||||||| || || |||||||| |||||||||||||| ||
gtgataagatctttggctcctcatggtttatctgtaataattcctcttgtatgcaataggaattgatgtgttatttgaaagattgaactgatggtttgatttatttgctagagcagGCCTGTTATTCTCTGTTCTGGTAACAGTGGTTATTACTGATGCAATAAAAAATGCAGTTGGTCGACCTCGACCAGACTTCTTTTGGCGTTGTTTTCCTGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125094772|gb|EL152154.1|EL152154
EST:     ATCTACTTCCGTTCGAAGAGATGTTTATGATCTTCATCACGCGGTGCTAG                         GTCTCTTATACTCTGTT
genomic: ATCTACTTCCG-TCGAAGAGATGTTTATGATCTTCATCACGCGGTGCTAGgttagaaact ... tgatgtgcagGTCTCTTATACTCTGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtcttctttcgcatatataattaacagtaaagttggcctttcttgatgtgcagGTCTCTTATACTCTGTTCTGGTGACAGCAGTACTTACCGATGCAATAAAGAATGCAGTTGGTCGACCACGTCCTGACTTCTTCTGGCGTTGTTTTCCAGA
                                      cctttctt  CT-rich tract
              atatataattaacagt  TA-rich tract