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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcacattcactactctcatatttgatggtttagctatttagtcaagaagatgatctgtttggattcctttgttgaaagtactctcttttattgtttttcagGCTAATGTTTATCATGCCACAAAATCTGACGGTTCGGAACTTGCAATAAAAGTGTACAAGACATCTGTTCTGGTTTTTAA

Basic information

species Arabidopsis thaliana
transcript AT2G24990.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G24990.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA18G46440.1 (Glycine max), 3'ss of exon 3
---------------gtatgtcacattcac-tactctcatatttgatggtttagctatttag----tcaagaagatgatctgtttggattcctttgttgaaagtact-ctcttttattgtttttcagGCTAATGTTTATCATGCCACAAAATCTGACGGTTCGGAACTTGCAATAAAAGTGTACAAGACATCTGTTCTGGTTTTTAA
               | |  |    || || |  |    | | ||||| |       ||| |    || |  | |||   | |   ||  ||    ||     |  | || | || || | |  ||||| |||||||||||||| || |||||||| |||   ||||||||||| ||||| ||||| ||||||||| |||| || ||
gtatgtgatccacctgaagcttttgtttacctgtttgtttttatgatgatgacatggtttggatcatcgactatatgtgatatcaagacaccacatttctgtttcttactgtgttgttttctaacagGCAAATGTTTATCATGCAACTAAATCTGATGGTCAAGAACTTGCAATTAAAGTATACAAAACATCTGTTTTGGTATTCAA

upper sequence: AT2G24990.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA09G39750.1 (Glycine max), 3'ss of exon 3
---------------gtatgtcacattcac-tactctcatatttgatggtttagctatttag----tcaagaagatgatctgtttggattcctttgttgaaagtact-ctcttttattgtttttcagGCTAATGTTTATCATGCCACAAAATCTGACGGTTCGGAACTTGCAATAAAAGTGTACAAGACATCTGTTCTGGTTTTTAA
               | |  |    || || |  |    | | ||||| |       ||| |    || |  | |||   | |   ||  ||    ||     |  | || | || || | |  ||||| |||||||||||||| || ||||||||   |   ||||||||||| ||||| ||||| |||||||||||||| |||||
gtatgtgatacacttgaagcttttgtttacctgtttgtttttatgatgatgacatggtttggatcatcgactatatgtgatatcaagacaccacatttccgtttcttactttgttgttttctaacagGCAAATGTTTATCATGCAACTAAATCTGATACTCAAGAACTTGCAATTAAAGTATACAAAACATCTGTTCTGGTATTTAA

upper sequence: AT2G24990.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv17s0000g01390.t01 (Vitis vinifera), 3'ss of exon 3
---------------------------------------------------------gtatgtcacattcactactctcatatttgatggtttagctatttagtcaagaagatgatctgtttggattcctttgttgaaagtactctcttttattgttttt--cagGCTAATGTTTATCATGCCACAAAATCTGACGGTTCGGAACTTGCAATAAAAGTGTACAAGACATCTGTTCTGGTTTTTAA
                                                         | |||   || |    |   | ||      ||  || |    ||         ||| || || |    || |||||||   | || | | | ||||| |||||  ||||| ||||||||||||||||||||||| || |||   ||||||||||| ||||||||||| || |||||||| || |||||
gtacgtggatccttacatccttcaatttattatctattatgatagctatagcctacagcatgcttcaattttgatgtttatgaagtctgcatttgtgtattttctgtcctgatcatgtgatcat-tttctttgttttcattattat-tgttattttttttaacagGCAAATGTTTATCATGCCACAAAATCCGATGGTCACGAACTTGCAATTAAAGTGTACAAAACTTCTGTTCTAGTATTTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagatgatctgtttggattcctttgttgaaagtactctcttttattgtttttcagGCTAATGTTTATCATGCCACAAAATCTGACGGTTCGGAACTTGCAATAAAAGTGTACAAGACATCTGTTCTGGTTTTTAA
                                tactctcttttattgt  CT-rich tract
                                     tcttttattgttttt  TA-rich tract