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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgactaaataatagggatcttacttagtagtagcggcagctatgggatttggggtctgaaacttttgttttgttgttgtaaacagGGCAGGAGGATTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCTGATGTTTTCATCTTAGCATTCTCTCTTATCAGTAAGGCTAGTTATGAGAATGT

Basic information

species Arabidopsis thaliana
transcript AT2G17800.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G17800.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os02g02840.1 (Oryza sativa), 3'ss of exon 2
gtactgactaaataatagggatcttacttagtagta-gcggcagctatgggat-ttggggtctgaaacttttgttttgttgttgtaaacagGGCAGGAGGATTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCTGATGTTTTCATCTTAGCATTCTCTCTTATCAGTAAGGCTAGTTATGAGAATGT
         |  |  | | | |  ||  || |  |    |   | | |    |     | | | ||  ||||  || |   |   |  |||| ||||||||||| |||||| | |||||  ||||||| || || |||||||||||| |  | || ||||| || ||||| ||||| || |||||||||||
------gtaatctggttgcgctgctatctaattctgcatgcttgttttcttctaccaagttattaagtttttccttcggaatacca--cagGTCAGGAGGATTACAACAGACTGAGACCACTGAGTTATCGTGGAGCTGATGTTTTCCTTCTGGCCTTCTCGCTAATCAGCAAGGCCAGCTATGAGAATGT

upper sequence: AT2G17800.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA01G36880.1 (Glycine max), 3'ss of exon 3
gtactgactaaataatagggatcttacttagtagtagcggcagctatgggatttggggtctgaaacttttgttttgttgttgtaaacagGGCAGGAGGATTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCTGATGTTTTCATCTTAGCATTCTCTCTTATCAGTAAGGCTAGTTATGAGAATGT
||| || ||   | ||     | ||  ||    |  |  | ||||  |   |||    |||| |  | |||| ||  |  ||  |||||| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||  | || |||||||| || || ||||| |||||||| |||||
gtaatg-ctgcgtgat-----tattgtttctgtgatgttggagcttggaagttttc--tctggatttattgtgttacttgtg-gaacagGACAAGAGGATTATAACAGATTAAGACCTTTGAGTTACCGTGGTGCCGATGTTTTCATACTGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGT

upper sequence: AT2G17800.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA11G08380.1 (Glycine max), 3'ss of exon 3
gtactgactaaataatagggatcttacttagtagtagcggcagctatgggatttggggtctgaaacttttgttttgttgttgtaaacagGGCAGGAGGATTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCTGATGTTTTCATCTTAGCATTCTCTCTTATCAGTAAGGCTAGTTATGAGAATGT
||| || ||   | ||     |||      ||  |   || ||||  |   |||    |||| |  | |||| || ||  ||  |||||| || |||||||| |||||||||||||||||||||||||| ||||| ||||||||||| || || |||||||| || || ||||| |||||||| |||||
gtaatg-ctgcgtgattattgtctct----gtgatgttgg-agcttggaagttttc--tctggatttattgtgttatttgtg-gaacagGACAAGAGGATTACAACAGATTAAGACCTTTGAGTTACCGTGGTGCCGATGTTTTCATATTGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGT

upper sequence: AT2G17800.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA02G05160.1 (Glycine max), 3'ss of exon 2
gtactgactaaataatagggatcttacttagtagtagcggcagctatgggatttggggtc----tgaaacttttgttttgttgttgta---aacagGGCAGGAGGATTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCTGATGTTTTCATCTTAGCATTCTCTCTTATCAGTAAGGCTAGTTATGAGAATGT
               ||  | | ||| ||  |  | |   |   | |||||| | | ||     | | | |||| || |  | || |    || ||| || ||||||||||| |||||| ||||||||||||| || ||||||||||||||||| ||||| |||||||| || || ||||| |||||||| |||||
--------------gtattgttgttattttttctttgt--ccattctgggatgttgagttctttttagatttttattattctattatgtggaatagGTCAAGAGGATTATAATAGATTACGACCTTTGAGTTATCGTGGTGCTGATGTTTTCATATTAGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGT

upper sequence: AT2G17800.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA16G23340.1 (Glycine max), 3'ss of exon 2
gtactgactaaataatagggatcttacttagtagtagcggcagctatgggatttggggtc----tgaaacttttgttttgttgttgta---aacagGGCAGGAGGATTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCTGATGTTTTCATCTTAGCATTCTCTCTTATCAGTAAGGCTAGTTATGAGAATGT
               ||    | ||| ||  |  | |   ||  | |||||| | | ||     | | | |||| || | || ||      || ||| || ||||||||||| |||||| ||||||||||||| || ||||| ||||||||||| ||||| |||||||| || || ||||| |||||||| |||||
--------------gtactactattattttttctttgt--caattttgggatgttgagttctttttagatttttattattttattacgtggaatagGTCAAGAGGATTATAATAGATTACGACCTTTGAGTTATCGTGGTGCCGATGTTTTCATATTAGCTTTCTCTCTGATTAGCAAGGCCAGTTATGAAAATGT

upper sequence: AT2G17800.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv04s0023g03860.t01 (Vitis vinifera), 3'ss of exon 3
gtactgactaaataatagggatcttacttagtagt-agcggcagctatgggatttgg--ggtctgaaacttttgttttgttgttgt--aaacagGGCAGGAGGATTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCTGATGTTTTCATCTTAGCATTCTCTCTTATCAGTAAGGCTAGTTATGAGAATGT
|||    |  | | |   |  || |  || ||  | |    |    |     ||||     | |    || |   |||||| |  |   |||||||||||||||||| |||||||| |||||||||||||| ||||| || ||||||||||| || ||||||||||| ||||| ||||| || ||||| |||||
gtagcttcacagtcacttgtttccttttttgttttcaattactaacaaacattttgattattttatggctctgaatttgttctctttggaacagGGCAGGAGGATTACAACAGATTGAGACCTTTGAGTTATCGCGGGGCAGATGTTTTCATATTGGCATTCTCTCTCATCAGCAAGGCCAGCTATGAAAATGT

upper sequence: AT2G17800.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: PP1S165_55V6.1 (Physcomitrella patens), 3'ss of exon 2
-gtactgactaaat---aatagggatcttacttagtagtagcggcagctatgggatttggggtctgaaact-------tttgttttgttgttgtaaa---cagGGCAGGAGGATTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCTGATGTTTTCATCTTAGCATTCTCTCTTATCAGTAAGGCTAGTTATGAGAATGT
  ||  ||||  ||   |  ||   |   ||||   |       |||  |  ||| |||   |||  || |       ||   |||||| |    ||   |||| ||||| |||||||||||  |  ||||| |||||||| | ||||||||||||||  |  ||||||||||||||||||| || ||||||||||||||  |
gttatcgactcgatcggatcagaagttgcactttcgaaccatt-cagtca--ggacttgtcatcttcaaatggtctcattccatttgttttctctaagcgcagGTCAGGAAGATTATAACAGGCTTCGACCTCTGAGTTACAGGGGTGCTGATGTTTTTCTACTAGCATTCTCTCTTATCAGCAAAGCTAGTTATGAGAACAT

upper sequence: AT2G17800.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: PP1S126_126V6.2 (Physcomitrella patens), 3'ss of exon 3
----gtactgactaaataatagggatcttac--ttagtagtag---cggcagctatgggatttggggtctgaaacttttgt--tttgttgttgtaaacagGGCAGGAGGATTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCTGATGTTTTCATCTTAGCATTCTCTCTTATCAGTAAGGCTAGTTATGAGAATGT
    |  ||  || | | | |   | | | |  || | ||| |   |   || |||    | |    | ||  |||       |||  |    ||  |||| || || ||||| |||||| |  ||||| |||||||| | || |||||||||||  |  ||||||| ||||||||||| |||||||||||||| ||| |
ttttggtcttgctgattcacacacaaccttccattggaagtcgaccccttagttatttcttattccatttgtcactgaaaacatttactaccctatgcagGTCAAGAAGATTACAACAGACTTCGACCTCTGAGTTACAGAGGCGCTGATGTTTTTCTTCTAGCATTTTCTCTTATCAGCAAGGCTAGTTATGAAAATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagcggcagctatgggatttggggtctgaaacttttgttttgttgttgtaaacagGGCAGGAGGATTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCTGATGTTTTCATCTTAGCATTCTCTCTTATCAGTAAGGCTAGTTATGAGAATGT
                                ttttgtttt  TA-rich tract