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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgaatcatataaaatgaatacacttagtcctcttcgtaatcttgattcttactagtacattgactttggaaaacattatagctagagtttgattgttaatgatcatgtacatagGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATGGATAAGTAACACAGTGACAGCAGTTATGGTGCCTCCGCATATAGACGGT

Basic information

species Arabidopsis thaliana
transcript AT2G13360.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116484714|gb|EG527306.1|EG527306
EST:     GGACTTGAGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAA                         GCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
genomic: GGACTTGAGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
EST: gi|125097416|gb|EL153885.1|EL153885
EST:     TTTGGGAAAGGCCACCAG                         GCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
genomic: TTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
EST: gi|124995810|gb|EL068079.1|EL068079
EST:     TCGTTTGGGAAAGGCCACCAG                         GCTTGCGGTGGAAGCAT-GGGGCTGAAAAACTGCACACAGAAGGAGGAATG
genomic: TCGTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
EST: gi|124950685|gb|EL026128.1|EL026128
EST:     TTGAGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAG                         GCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
genomic: TTGAGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
EST: gi|125196079|gb|EL211033.1|EL211033
EST:     AGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAG                         GCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
genomic: AGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
EST: gi|125253954|gb|EL268039.1|EL268039
EST:     GGACTTGAGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAG                         GCTTGCGGTGGAAGCATGGGGG
genomic: GGACTTGAGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGG
EST: gi|124753190|gb|EH843320.1|EH843320
EST:     ATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAG                         GCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
genomic: ATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
EST: gi|125202831|gb|EL217785.1|EL217785
EST:     CATGCTCGTTTGGGAAAGGCCACCAG                         GCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGG
genomic: CATGCTCGTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGG
EST: gi|124881598|gb|EH960500.1|EH960500
EST:     GGACTTGAGAATATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAG                         GCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAA
genomic: GGACTTGAGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAA
EST: gi|124960836|gb|EL035473.1|EL035473
EST:     GTTTGGG-AAGGCCACCAG                         GCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
genomic: GTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
EST: gi|116473689|gb|EG516281.1|EG516281
EST:     CGCCATGCTCGTTTGGGAAAGGCCACCAG                         GCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
genomic: CGCCATGCTCGTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
EST: gi|125017468|gb|EL089737.1|EL089737
EST:     CCATGCTCGTTTGGGAAAGGCCACCAG                         GCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
genomic: CCATGCTCGTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
EST: gi|125319151|gb|EL333236.1|EL333236
EST:     GGACTTGAGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAG                         GCTTGCGGTGG
genomic: GGACTTGAGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGG
EST: gi|125014891|gb|EL087160.1|EL087160
EST:     TGCTCGTTTGGGAAAGGCCACCAG                         GCTTGCGGTGGAAGCATGGGGGCTAGAAAAACTGCACACAGAAGGAGGAAT
genomic: TGCTCGTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGGCT-GAAAAACTGCACACAGAAGGAGGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgactttggaaaacattatagctagagtttgattgttaatgatcatgtacatagGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATGGATAAGTAACACAGTGACAGCAGTTATGGTGCCTCCGCATATAGACGGT
                                  tgttaat  putative branch site (score: 3)
          aaaacattata  TA-rich tract