1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaattaagaagctaattttctatttttagtcatatgagaaatattcaacttaatctgaccaaaccaactttttgatttgatataatataaagGTGACTAAATACGAAGATGCACCACGAAGCAAATGGAAGAAATGGAATTGGAGATCGGAAGGTGATTTGTTCCTAAACGGTGCGTTTTTTACGCCTTCGG
species | Arabidopsis thaliana |
transcript | AT1G67750.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAGTCAAGGCAATAGGTTTCTTGCTCCAAACGACCATGTCTTTAAAGAG GTGACTAAATACGAAGATGCACCACGAAGCAAATGGAAGAAATGGAATTGGEST: gi|125103450|gb|EL157853.1|EL157853
genomic: ACAGTCAAGGCAATAGGTTTCTTGCTCCAAACGACCATGTCTTTAAAGAGgtaattaaga ... taatataaagGTGACTAAATACGAAGATGCACCACGAAGCAAATGGAAGAAATGGAATTGG
EST: ACAGTCAAGGCAATAGGTTTCTTGCTCCAAACGACCATGTCTTTAAAGAG GTGACTAAATACGAAGAEST: gi|116436273|gb|EG478865.1|EG478865
genomic: ACAGTCAAGGCAATAGGTTTCTTGCTCCAAACGACCATGTCTTTAAAGAGgtaattaaga ... taatataaagGTGACTAAATACGAAGA
EST: ACAGTCAAGGCAATAGGTTTCTTGCTCCAAACGACCATGTCTTTAAAGAG GTGACTAAATACGAAGATGCCCCACGAAGCAAATGGAAGAAATGGAATTGG
genomic: ACAGTCAAGGCAATAGGTTTCTTGCTCCAAACGACCATGTCTTTAAAGAGgtaattaaga ... taatataaagGTGACTAAATACGAAGATGCACCACGAAGCAAATGGAAGAAATGGAATTGG
gaaatattcaacttaatctgaccaaaccaactttttgatttgatataatataaagGTGACTAAATACGAAGATGCACCACGAAGCAAATGGAAGAAATGGAATTGGAGATCGGAAGGTGATTTGTTCCTAAACGGTGCGTTTTTTACGCCTTCGG
aactttttgatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattaagaagctaattttctatttttagtcatatgagaaatattcaacttaatctgaccaaaccaactttttgatttgatataatataaagGTGACTAAATACGAAGATGCACCACGAAGCAAATGGAAGAAATGGAATTGGAGATCGGAAGGTGATTTGTTCCTAAACGGTGCGTTTTTTACGCCTTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC