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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatctgcgagtccaatgtcaaaaatctcgagtattctttcagaaactttcaagaactgtcttgagttcatttagtgctgttccttctcgttttgactccatttctttttgacttctcctataccagATCTGCAACGAGGGTCGCCAAAATGCGTTAGCTGAGATTTTGGAGATACTGACAGTGGTGTGCGAGACCTACAAACTGCCTTTAGCCCAGACATGGGTCC

Basic information

species Arabidopsis thaliana
transcript AT1G64530.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G64530.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA09G25230.1 (Glycine max), 3'ss of exon 4
gttatctgcgagtccaatgt-caaaaatctcgagtattctttcagaaactttcaagaactgtcttgagttcatttagtgctgtt-ccttctcgttttgactccatttctttttgac--ttctcctataccagATCTGCAACGAGGGTCGCCAAAATGCGTTAGCTGAGATTTTGGAGATACTGACAGTGGTGTGCGAGACCTACAAACTGCCTTTAGCCCAGACATGGGTCC
||  | | | | |   |||       |||| |  |||| | ||| |||  ||  |||  | | |  |||||  | | | || |     ||   | ||| | |   |      || |  ||||  || ||||||| || ||||| |  |||||  |||| ||||| ||||||||||||||||||||||| ||||| || ||  | |   ||||| | || || |||||||| |
gtcgttttctactatcatgcatccctatcttgtttattttctcaaaaatatt--agatatatatgtagttctgtgacttctatcgtactcctctattgtcacagatataacctggcaattcttttaaaccagATATGTAACGAAGACCGCCAGTATGCATTAGCCGAGATTTTGGAGATACTGACAGTTGTGTGTGAAACTCATAGTTTGCCTCTGGCACAAACATGGGTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtgctgttccttctcgttttgactccatttctttttgacttctcctataccagATCTGCAACGAGGGTCGCCAAAATGCGTTAGCTGAGATTTTGGAGATACTGACAGTGGTGTGCGAGACCTACAAACTGCCTTTAGCCCAGACATGGGTCC
                                  ttttgac  putative branch site (score: 3)
                        ctccatttctttttga  CT-rich tract
                            atttcttttt  TA-rich tract