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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgtttaaagttataatgtagaagcaaagtgacttgtgggctttctatcaaaagcttatgtgagtcttcattttgattatcaaaactatgcagGCACTTGATGTCATCCGTGAGCTGCAAAAGCACTTCCCTATAAAGCGTTCTCCAATGAGACTGCGTCTTACTGTTCCTGTTCAAAATTTCCCCTCGCTTC

Basic information

species Arabidopsis thaliana
transcript AT1G43860.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86041634|gb|DR337389.1|DR337389
EST:     TGCATGAAATTCATTTTGCTGTTGATCCTCATAGTAATTCCAAGAAGCAG                         GCACTTGATGTCATCCGTGAGCTGCAAAAGCACTTCCCTATAAAGCGTTCT
genomic: TGCATGAAATTCATTTTGCTGTTGATCCTCATAGTAATTCCAAGAAGCAGgtgagttgtt ... aactatgcagGCACTTGATGTCATCCGTGAGCTGCAAAAGCACTTCCCTATAAAGCGTTCT
EST: gi|86041636|gb|DR337391.1|DR337391
EST:     TGCATGAAATTCATTTTGCTGTTGATCCTCATAGTAATTCCAAGAAGCAG                         GCACTTGATGTCAT
genomic: TGCATGAAATTCATTTTGCTGTTGATCCTCATAGTAATTCCAAGAAGCAGgtgagttgtt ... aactatgcagGCACTTGATGTCAT
EST: gi|164002037|gb|ES213799.1|ES213799
EST:     TAGTAATTCCAAGAAGCAG                         GCACTTGATGTCATCCGTGAGCTGCAAAAGCACTTCCCTATAAAGCGTTCT
genomic: TAGTAATTCCAAGAAGCAGgtgagttgtt ... aactatgcagGCACTTGATGTCATCCGTGAGCTGCAAAAGCACTTCCCTATAAAGCGTTCT
EST: gi|164207063|gb|ES164553.1|ES164553
EST:     GTAATTCCAAGAAGCAG                         GCACTTGATGTCATCCGTGAGCTGCAAAAGCACTTCCCTATAAAGCGTTCT
genomic: GTAATTCCAAGAAGCAGgtgagttgtt ... aactatgcagGCACTTGATGTCATCCGTGAGCTGCAAAAGCACTTCCCTATAAAGCGTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggctttctatcaaaagcttatgtgagtcttcattttgattatcaaaactatgcagGCACTTGATGTCATCCGTGAGCTGCAAAAGCACTTCCCTATAAAGCGTTCTCCAATGAGACTGCGTCTTACTGTTCCTGTTCAAAATTTCCCCTCGCTTC
                                ttttgat  putative branch site (score: 4)
                               attttgattatcaaaa  TA-rich tract