1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ataagagtatatttctatgtagtgtctttcaagcaatattcttataccgagaacacgagtatcctactaatgttgcaaatatgtttttcctccattttagGACTGTGTAAAGCAGACTTTATCAAGCAAAGGAAAATATGTGTCGGTGAATATTGGCCCTATCCAAGTCGTCTCTAGTGAGCAG
species | Arabidopsis thaliana |
transcript | AT1G27385.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGCTATGGTTGTTGCTGTTGAATCTGTTATTGACCGACAAATTCCAGAG GACTGTGTAAAGCAGACTTTATCAAGCAAAGGAAAATATGTGTCGGTGAATEST: gi|301503145|gb|HO208685.1|HO208685
genomic: ATGCTATGGTTGTTGCTGTTGAATCTGTTATTGACCGACAAATTCCAGAGgtaatatttc ... tccattttagGACTGTGTAAAGCAGACTTTATCAAGCAAAGGAAAATATGTGTCGGTGAAT
EST: ATGCTATGGTTGTTGCTGTTGAATCTGTTATTGACCGACAAATTCCAGAG GACTGTGTAAAGCAGACTTTATCAAGCAAAGGAAAATATGTGTCGGTGAATEST: gi|19742694|gb|AU228047.1|AU228047
genomic: ATGCTATGGTTGTTGCTGTTGAATCTGTTATTGACCGACAAATTCCAGAGgtaatatttc ... tccattttagGACTGTGTAAAGCAGACTTTATCAAGCAAAGGAAAATATGTGTCGGTGAAT
EST: ATGCTATGGTTGTTGCTGTTGAATCTGTTATTGACCGACAAATTCCAGAG GTCTGTGTAAAGCAGACTTTATCAAGCAAAGGAAAATATGTGTCGGTGAATEST: gi|19876202|gb|AU237033.1|AU237033
genomic: ATGCTATGGTTGTTGCTGTTGAATCTGTTATTGACCGACAAATTCCAGAGgtaatatttc ... tccattttagGACTGTGTAAAGCAGACTTTATCAAGCAAAGGAAAATATGTGTCGGTGAAT
EST: ATGCTATGGTTGTTGCTGTTGAATCTGTTATTGACCGACAAATTCCAGAG GTCTGTGTAAAGCAGACTTTATCAAGCAAAGGAAAATATGTGTCGGTGAATEST: gi|86079028|gb|DR374785.1|DR374785
genomic: ATGCTATGGTTGTTGCTGTTGAATCTGTTATTGACCGACAAATTCCAGAGgtaatatttc ... tccattttagGACTGTGTAAAGCAGACTTTATCAAGCAAAGGAAAATATGTGTCGGTGAAT
EST: ATGCTATGGTTGTTGCTGTTGAATCTGTTATTGACCGACAAATTCCAGAG GACTGTGTAAAGCAGACTTTATCAAGCAAAGGAAAATATGTGTCGGTGAATEST: gi|125228187|gb|EL242272.1|EL242272
genomic: ATGCTATGGTTGTTGCTGTTGAATCTGTTATTGACCGACAAATTCCAGAGgtaatatttc ... tccattttagGACTGTGTAAAGCAGACTTTATCAAGCAAAGGAAAATATGTGTCGGTGAAT
EST: ATGCTATGGTTGTTGCTGTTGAATCTGTTATTGACCGACAAATTCCAGAG GACTGTGTAAAGCAGACTTTATCAAGCAAAGGEST: gi|19798774|gb|AU230064.1|AU230064
genomic: ATGCTATGGTTGTTGCTGTTGAATCTGTTATTGACCGACAAATTCCAGAGgtaatatttc ... tccattttagGACTGTGTAAAGCAGACTTTATCAAGCAAAGG
EST: ATGCTATGGTTGTTGCTGTTGAATCTGTTATTGACCCACAAATTCCAGAG GACTGTGTAAAGCAGACTTTATCAAGCAAAGGAAAATATGTGGTCGGTGAA
genomic: ATGCTATGGTTGTTGCTGTTGAATCTGTTATTGACCGACAAATTCCAGAGgtaatatttc ... tccattttagGACTGTGTAAAGCAGACTTTATCAAGCAAAGGAAAATATGT-GTCGGTGAA
accgagaacacgagtatcctactaatgttgcaaatatgtttttcctccattttagGACTGTGTAAAGCAGACTTTATCAAGCAAAGGAAAATATGTGTCGGTGAATATTGGCCCTATCCAAGTCGTCTCTAGTGAGCAG
tactaat putative branch site (score: 1)
tgtttttcctccattt putative PPT
aaatatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataagagtatatttctatgtagtgtctttcaagcaatattcttataccgagaacacgagtatcctactaatgttgcaaatatgtttttcctccattttagGACTGTGTAAAGCAGACTTTATCAAGCAAAGGAAAATATGTGTCGGTGAATATTGGCCCTATCCAAGTCGTCTCTAGTGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG