1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaactaattagcttcttcagctaccttcagagagtgtttgtttttttagtagatttttttgatggttttgatgttgaaatagGAATCTGTTGGGAGAAGATCTTGGACCTCTAAGTACAAAGGAGCTTGAGTCACTTGAGAGACAGCTTGATTCTTCCTTGAAGCAGATCAGAGCTCTCAGG
species | Arabidopsis thaliana |
transcript | AT1G24260.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGTATCTCAAGCTTAAGGAGCGTTATGACGCCTTACAAAGAACCCAAAG GAATCTTGTTGGGAGAAGATCTTGGACCTCTAAGTACAAAGGAGCTTGAGTEST: gi|164211008|gb|ES085132.1|ES085132
genomic: GAGTATCTCAAGCTTAAGGAGCGTTATGACGCCTTACAGAGAACCCAAAGgtaaactaat ... gttgaaatagGAATCT-GTTGGGAGAAGATCTTGGACCTCTAAGTACAAAGGAGCTTGAGT
EST: GAGTATCTCAAGCTTAAGGGGCGTTATGACGCCTTACAAAGAACCCAAAG GAATCTGTTGGGAGAAGATCTTGGACCTCTAAGTACEST: gi|164220111|gb|ES001741.1|ES001741
genomic: GAGTATCTCAAGCTTAAGGAGCGTTATGACGCCTTACAGAGAACCCAAAGgtaaactaat ... gttgaaatagGAATCTGTTGGGAGAAGATCTTGGACCTCTAAGTAC
EST: TATGACGCCTTACAAAGAACCCAAAG GAATCTGTTGGGAGAAGATCTTGGACCTCTAAGTACAAAGGNGCTTGAGTC
genomic: TATGACGCCTTACAGAGAACCCAAAGgtaaactaat ... gttgaaatagGAATCTGTTGGGAGAAGATCTTGGACCTCTAAGTACAAAGGAGCTTGAGTC
cagagagtgtttgtttttttagtagatttttttgatggttttgatgttgaaatagGAATCTGTTGGGAGAAGATCTTGGACCTCTAAGTACAAAGGAGCTTGAGTCACTTGAGAGACAGCTTGATTCTTCCTTGAAGCAGATCAGAGCTCTCAGG
ttttgat putative branch site (score: 4)
tttgtttttttagtag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaactaattagcttcttcagctaccttcagagagtgtttgtttttttagtagatttttttgatggttttgatgttgaaatagGAATCTGTTGGGAGAAGATCTTGGACCTCTAAGTACAAAGGAGCTTGAGTCACTTGAGAGACAGCTTGATTCTTCCTTGAAGCAGATCAGAGCTCTCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT