1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatatctctatttggctggcttctcaatttactgatttggtgcttaagttgatcatttttgttgttgtggaatttcagGGGAATTCAGCGCCTTGGAGGCATACTATGGAAG
species | Arabidopsis thaliana |
transcript | AT1G21065.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGTTCAGGCTGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAG GGGAATTCAGCGCCTTGGAGGCATACTATGGAAGGTCCTGATGEST: gi|116377495|gb|EG420087.1|EG420087
genomic: ATGTTCAGGCTGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAGgtatatctct ... ggaatttcagGGGAATTCAGCGCCTTGGAGGCATACTATGGAAGGTCCTGATG
EST: CACATGTTCAGGCTGATACTGACACTTTCTTGAACAGGATTGTTCCTGAG GGGAATTCAGCGCCTTGGAGGCATACTATGGAAGEST: gi|86078659|gb|DR374416.1|DR374416
genomic: CAGATGTTCAGGCTGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAGgtatatctct ... ggaatttcagGGGAATTCAGCGCCTTGGAGGCATACTATGGAAG
EST: CAGATGTTCAGGCTGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAG GGGAATTCAGCGCCTTGGAGGCATACTATGGAAGEST: gi|124980342|gb|EL053301.1|EL053301
genomic: CAGATGTTCAGGCTGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAGgtatatctct ... ggaatttcagGGGAATTCAGCGCCTTGGAGGCATACTATGGAAG
EST: CAGATGTTCAGGCTGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAG GGGAATTCAGCGCCTTGGAGGCATAEST: gi|116377317|gb|EG419909.1|EG419909
genomic: CAGATGTTCAGGCTGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAGgtatatctct ... ggaatttcagGGGAATTCAGCGCCTTGGAGGCATA
EST: CACATGTTCAGGCTGATACTGACACTTTCTTGAACAGGATTGTTCCTGAG GGGAATTCAGCGCCTTGGAGGCATACTATGGAAGEST: gi|125162823|gb|EL189593.1|EL189593
genomic: CAGATGTTCAGGCTGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAGgtatatctct ... ggaatttcagGGGAATTCAGCGCCTTGGAGGCATACTATGGAAG
EST: CAGATGTTCAGGCTGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAG GGGAATTCAGC-CCTTGGAGGCATACTATGGAAGEST: gi|86028440|gb|DR324193.1|DR324193
genomic: CAGATGTTCAGGCTGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAGgtatatctct ... ggaatttcagGGGAATTCAGCGCCTTGGAGGCATACTATGGAAG
EST: CAGATGTTCAGGCTGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAG GGGAATTCAGCGCCTTGGAGGCATACTATGGAAGEST: gi|124933671|gb|EL010809.1|EL010809
genomic: CAGATGTTCAGGCTGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAGgtatatctct ... ggaatttcagGGGAATTCAGCGCCTTGGAGGCATACTATGGAAG
EST: CAGATGTTCAGGCTGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAG GGGAATTACAGCGCCTTGGAGGCATACTATGGEST: gi|116422128|gb|EG464720.1|EG464720
genomic: CAGATGTTCAGGCTGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAGgtatatctct ... ggaatttcagGGGAATT-CAGCGCCTTGGAGGCATACTATGG
EST: CAGATGTTCAGGCTGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAG GGGAATTCAGCGCCTTGGAGGCAT
genomic: CAGATGTTCAGGCTGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAGgtatatctct ... ggaatttcagGGGAATTCAGCGCCTTGGAGGCAT
tcaatttactgatttggtgcttaagttgatcatttttgttgttgtggaatttcagGGGAATTCAGCGCCTTGGAGGCATACTATGGAAG
atcattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatctctatttggctggcttctcaatttactgatttggtgcttaagttgatcatttttgttgttgtggaatttcagGGGAATTCAGCGCCTTGGAGGCATACTATGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG