1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagtcagaatcagattagatgatgtgtgtgttatcaaaagcctaaatttaagttcattgttcgttcttgcagAACATTGACTCCAGGGCATGATGCTGTTCAAAAGGTCACGTTGATACCACGAGGCCAGGCTAGAGGTCTGACTTGGTTCATTCCCTCAGATGACCCAACT
species | Arabidopsis thaliana |
transcript | AT1G06430.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGAGCAAAAGCTTGGTTGCTTACCATGAAGTTGGCCATGCCATATGTGG AACATTGACTCCAGGGCAEST: gi|124905666|gb|EH979746.1|EH979746
genomic: AAGAGCAAAAGCTTGGTTGCTTACCATGAAGTTGGCCATGCCATATGTGGgtaagtcaga ... gttcttgcagAACATTGACTCCAGGGCA
EST: TGCCATATGCGG AACATTGACTCCAGGGCATGATGCTGTTCAAAAGGTCACGTTGATACCACGEST: gi|86070337|gb|DR366094.1|DR366094
genomic: TGCCATATGTGGgtaagtcaga ... gttcttgcagAACATTGACTCCAGGGCATGATGCTGTTCAAAAGGTCACGTTGATACCACG
EST: AAGAGCAAAAGCTTGGTTGCTTACCATGAA-TTG-CCATGCCATATGTGG A-CATTGACTCCAGG
genomic: AAGAGCAAAAGCTTGGTTGCTTACCATGAAGTTGGCCATGCCATATGTGGgtaagtcaga ... gttcttgcagAACATTGACTCCAGG
gatgatgtgtgtgttatcaaaagcctaaatttaagttcattgttcgttcttgcagAACATTGACTCCAGGGCATGATGCTGTTCAAAAGGTCACGTTGATACCACGAGGCCAGGCTAGAGGTCTGACTTGGTTCATTCCCTCAGATGACCCAACT
gcctaaa putative branch site (score: 3)
ttcgttctt putative PPT
taaatttaagttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcagaatcagattagatgatgtgtgtgttatcaaaagcctaaatttaagttcattgttcgttcttgcagAACATTGACTCCAGGGCATGATGCTGTTCAAAAGGTCACGTTGATACCACGAGGCCAGGCTAGAGGTCTGACTTGGTTCATTCCCTCAGATGACCCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG